Tiziana Castrignanò

According to our database, Tiziana Castrignanò authored at least 22 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

HPC-T-Annotator: an HPC tool for de novo transcriptome assembly annotation.

Lorenzo Arcioni, Manuel Arcieri, Jessica Di Martino, Franco Liberati, Paolo Bottoni, Tiziana Castrignanò

BMC Bioinform., December, 2024

2023

IGUANER - DIfferential Gene Expression and fUnctionAl aNalyzER.

Valentina Pinna, Jessica Di Martino, Franco Liberati, Paolo Bottoni, Tiziana Castrignanò

Proceedings of the Big Data Analytics in Astronomy, Science, and Engineering, 2023

2022

ParSMURF-NG: A Machine Learning High Performance Computing System for the Analysis of Imbalanced Big Omics Data.

Alessandro Petrini, Marco Notaro, Jessica Gliozzo, Tiziana Castrignanò, Peter N. Robinson, Elena Casiraghi, Giorgio Valentini

Proceedings of the Artificial Intelligence Applications and Innovations. AIAI 2022 IFIP WG 12.5 International Workshops, 2022

2021

REDIportal: millions of novel A-to-I RNA editing events from thousands of RNAseq experiments.

Luigi Mansi, Marco Antonio Tangaro, Claudio Lo Giudice, Tiziano Flati, Eli Kopel, Amos Avraham Schaffer, Tiziana Castrignanò, Giovanni Chillemi, Graziano Pesole, Ernesto Picardi

Nucleic Acids Res., 2021

2020

HPC-REDItools: a novel HPC-aware tool for improved large scale RNA-editing analysis.

Tiziano Flati, Silvia Gioiosa, Nicola Spallanzani, Ilario Tagliaferri, Maria Angela Diroma, Graziano Pesole, Giovanni Chillemi, Ernesto Picardi, Tiziana Castrignanò

BMC Bioinform., 2020

ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics community.

Tiziana Castrignanò, Silvia Gioiosa, Tiziano Flati, Mirko Cestari, Ernesto Picardi, Matteo Chiara, Maddalena Fratelli, Stefano Amente, Marco Cirilli, Marco Antonio Tangaro, Giovanni Chillemi, Graziano Pesole, Federico Zambelli

BMC Bioinform., 2020

2018

BioWebEngine: A generation environment for bioinformatics research.

Paolo Bottoni, Tiziana Castrignanò, Tiziano Flati, Francesco Maggi

Proceedings of the 2018 IEEE Symposium on Visual Languages and Human-Centric Computing, 2018

2014

ODESSA: A high performance analysis pipeline for Ultra Deep targeted Exome Sequencing data.

Mattia D'Antonio, Paolo D'Onorio De Meo, Tiziana Castrignanò, Giovanni Erbacci, Matteo Pallocca, Graziano Pesole

Proceedings of the International Conference on High Performance Computing & Simulation, 2014

2013

SpliceAid-F: a database of human splicing factors and their RNA-binding sites.

Matteo Giulietti, Francesco Piva, Mattia D'Antonio, Paolo D'Onorio De Meo, Daniele Paoletti, Tiziana Castrignanò, Anna Maria D'Erchia, Ernesto Picardi, Federico Zambelli, Giovanni Principato, Giulio Pavesi, Graziano Pesole

Nucleic Acids Res., 2013

WEP: a high-performance analysis pipeline for whole-exome data.

Mattia D'Antonio, Paolo D'Onorio De Meo, Daniele Paoletti, Berardino Elmi, Matteo Pallocca, Nico Sanna, Ernesto Picardi, Graziano Pesole, Tiziana Castrignanò

BMC Bioinform., 2013

2012

MitoZoa 2.0: a database resource and search tools for comparative and evolutionary analyses of mitochondrial genomes in Metazoa.

Paolo D'Onorio De Meo, Mattia D'Antonio, Francesca Griggio, Renato Lupi, Massimiliano Borsani, Giulio Pavesi, Tiziana Castrignanò, Graziano Pesole, Carmela Gissi

Nucleic Acids Res., 2012

2011

ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing.

Pier Luigi Martelli, Mattia D'Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna Maria D'Erchia, Paolo D'Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole

Nucleic Acids Res., 2011

ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments.

Ernesto Picardi, Mattia D'Antonio, Danilo Carrabino, Tiziana Castrignanò, Graziano Pesole

Bioinform., 2011

2010

Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing.

David Stephen Horner, Giulio Pavesi, Tiziana Castrignanò, Paolo D'Onorio De Meo, Sabino Liuni, Michael Sammeth, Ernesto Picardi, Graziano Pesole

Briefings Bioinform., 2010

2009

Radiation Genes: a database devoted to microarrays screenings revealing transcriptome alterations induced by ionizing radiation in mammalian cells.

Francesco Chiani, Camilla Iannone, Rodolfo Negri, Daniele Paoletti, Mattia D'Antonio, Paolo D'Onorio De Meo, Tiziana Castrignanò

Database J. Biol. Databases Curation, 2009

2008

ASPicDB: A database resource for alternative splicing analysis.

Tiziana Castrignanò, Mattia D'Antonio, Anna Anselmo, Danilo Carrabino, A. D'Onorio De Meo, Anna Maria D'Erchia, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Alberto Riva, Raffaella Rizzi, Paola Bonizzoni, Graziano Pesole

Bioinform., 2008

2007

A high performance grid-web service framework for the identification of 'conserved sequence tags'.

Paolo D'Onorio De Meo, Danilo Carrabino, Nico Sanna, Tiziana Castrignanò, Giorgio Grillo, Flavio Licciulli, Sabino Liuni, Matteo Re, Flavio Mignone, Graziano Pesole

Future Gener. Comput. Syst., 2007

The MEPS server for identifying protein conformational epitopes.

Tiziana Castrignanò, Paolo D'Onorio De Meo, Danilo Carrabino, Massimiliano Orsini, Matteo Floris, Anna Tramontano

BMC Bioinform., 2007

2006

ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization.

Tiziana Castrignanò, Raffaella Rizzi, Ivano Giuseppe Talamo, Paolo D'Onorio De Meo, Anna Anselmo, Paola Bonizzoni, Graziano Pesole

Nucleic Acids Res., 2006

The PMDB Protein Model Database.

Tiziana Castrignanò, Paolo D'Onorio De Meo, Domenico Cozzetto, Ivano Giuseppe Talamo, Anna Tramontano

Nucleic Acids Res., 2006

GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.

Tiziana Castrignanò, Paolo D'Onorio De Meo, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Ivano Giuseppe Talamo, Graziano Pesole

Bioinform., 2006

2004

CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison.

Tiziana Castrignanò, Alessandro Canali, Giorgio Grillo, Sabino Liuni, Flavio Mignone, Graziano Pesole

Nucleic Acids Res., 2004