Timothy M. McPhillips

According to our database, Timothy M. McPhillips authored at least 44 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2023

Synthesizing Knowledge of Past Environments (SKOPE) Web Application.

R. Kyle Bocinsky, Andrew Gillreath-Brown, Keith Kintigh, Ann Kinzig, Tim Kohler, Allen Lee, Bertram Ludäscher, Timothy M. McPhillips

Dataset, October, 2023

Synthesizing Knowledge of Past Environments (SKOPE) Web Application.

R. Kyle Bocinsky, Andrew Gillreath-Brown, Keith Kintigh, Ann Kinzig, Tim Kohler, Allen Lee, Bertram Ludäscher, Timothy M. McPhillips, Christine Nguyen, Calvin Pritchard

Dataset, July, 2023

2022

Synthesizing Knowledge of Past Environments (SKOPE) Web Application.

R. Kyle Bocinsky, Andrew Gillreath-Brown, Keith Kintigh, Ann Kinzig, Tim Kohler, Allen Lee, Bertram Ludäscher, Timothy M. McPhillips, Christine Nguyen, Calvin Pritchard

Dataset, June, 2022

Synthesizing Knowledge of Past Environments (SKOPE) Web Application.

R. Kyle Bocinsky, Andrew Gillreath-Brown, Keith Kintigh, Ann Kinzig, Tim Kohler, Allen Lee, Bertram Ludäscher, Timothy M. McPhillips, Christine Nguyen, Calvin Pritchard

Dataset, June, 2022

2021

Detailed Provenance Metadata from Statistical Analysis Software: TaPP Applications Track.

George Alter, Jack Gager, Pascal Heus, Carson Hunter, Sanda Ionescu, Jeremy Iverson, H. V. Jagadish, Bertram Ludäscher, Jared Lyle, Timothy M. McPhillips, Alexander Mueller, Sigve Nordgaard, Ørnulf Risnes, Dan J. Smith, Jie Song, Thomas Thelen

Proceedings of the 13th International Workshop on Theory and Practice of Provenance, 2021

A Model and System for Querying Provenance from Data Cleaning Workflows.

Nikolaus Nova Parulian, Timothy M. McPhillips, Bertram Ludäscher

Proceedings of the Provenance and Annotation of Data and Processes, 2021

CPR-A Comprehensible Provenance Record for Verification Workflows in Whole Tale.

Timothy M. McPhillips, Thomas Thelen, Craig Willis, Kacper Kowalik, Matthew B. Jones, Bertram Ludäscher

Proceedings of the Provenance and Annotation of Data and Processes, 2021

2019

Modeling Provenance and Understanding Reproducibility for OpenRefine Data Cleaning Workflows.

Timothy M. McPhillips, Lan Li, Nikolaus Nova Parulian, Bertram Ludäscher

Proceedings of the 11th International Workshop on Theory and Practice of Provenance, 2019

Toward Enabling Reproducibility for Data-Intensive Research Using the Whole Tale Platform.

Kyle Chard, Niall Gaffney, Mihael Hategan, Kacper Kowalik, Bertram Ludäscher, Timothy M. McPhillips, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor, Thomas Thelen, Matthew J. Turk, Craig Willis

Proceedings of the Parallel Computing: Technology Trends, 2019

Reproducibility by Other Means: Transparent Research Objects.

Timothy M. McPhillips, Craig Willis, Michael R. Gryk, Santiago Núñez Corrales, Bertram Ludäscher

Proceedings of the 15th International Conference on eScience, 2019

Application of BagIt-Serialized Research Object Bundles for Packaging and Re-Execution of Computational Analyses.

Kyle Chard, Thomas Thelen, Matthew J. Turk, Craig Willis, Niall Gaffney, Matthew B. Jones, Kacper Kowalik, Bertram Ludäscher, Timothy M. McPhillips, Jarek Nabrzyski, Victoria Stodden, Ian J. Taylor

Proceedings of the 15th International Conference on eScience, 2019

2018

Scientific Workflows.

Bertram Ludäscher, Shawn Bowers, Timothy M. McPhillips

Proceedings of the Encyclopedia of Database Systems, Second Edition, 2018

Validation and Inference of Schema-Level Workflow Data-Dependency Annotations.

Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher

Proceedings of the Provenance and Annotation of Data and Processes, 2018

2017

Revealing the Detailed Lineage of Script Outputs Using Hybrid Provenance.

Qian Zhang, Yang Cao, Qiwen Wang, Duc Vu, Priyaa Thavasimani, Timothy M. McPhillips, Paolo Missier, Peter Slaughter, Christopher Jones, Matthew B. Jones, Bertram Ludäscher

Int. J. Digit. Curation, 2017

2016

Yin & Yang: Demonstrating Complementary Provenance from noWorkflow & YesWorkflow.

João Felipe Pimentel, Saumen C. Dey, Timothy M. McPhillips, Khalid Belhajjame, David Koop, Leonardo Murta, Vanessa Braganholo, Bertram Ludäscher

Proceedings of the Provenance and Annotation of Data and Processes, 2016

DataONE: A Data Federation with Provenance Support.

Yang Cao, Christopher Jones, Víctor Cuevas-Vicenttín, Matthew B. Jones, Bertram Ludäscher, Timothy M. McPhillips, Paolo Missier, Christopher R. Schwalm, Peter Slaughter, David Vieglais, Lauren Walker, Yaxing Wei

Proceedings of the Provenance and Annotation of Data and Processes, 2016

2015

YesWorkflow: A User-Oriented, Language-Independent Tool for Recovering Workflow Information from Scripts.

Timothy M. McPhillips, Tianhong Song, Tyler Kolisnik, Steve Aulenbach, Khalid Belhajjame, R. Kyle Bocinsky, Yang Cao, Fernando Chirigati, Saumen C. Dey, Juliana Freire, Deborah N. Huntzinger, Christopher Jones, David Koop, Paolo Missier, Mark Schildhauer, Christopher R. Schwalm, Yaxing Wei, James Cheney, Mark Bieda, Bertram Ludäscher

CoRR, 2015

Retrospective Provenance Without a Runtime Provenance Recorder.

Timothy M. McPhillips, Shawn Bowers, Khalid Belhajjame, Bertram Ludäscher

Proceedings of the 7th USENIX Workshop on the Theory and Practice of Provenance, 2015

2012

Golden Trail: Retrieving the Data History that Matters from a Comprehensive Provenance Repository.

Paolo Missier, Bertram Ludäscher, Saumen C. Dey, Michael Wang, Timothy M. McPhillips, Shawn Bowers, Michael Agun, Ilkay Altintas

Int. J. Digit. Curation, 2012

Workflows for microarray data processing in the Kepler environment.

Thomas Stropp, Timothy M. McPhillips, Bertram Ludäscher, Mark Bieda

BMC Bioinform., 2012

Declarative Rules for Inferring Fine-Grained Data Provenance from Scientific Workflow Execution Traces.

Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher

Proceedings of the Provenance and Annotation of Data and Processes, 2012

2011

Improving Workflow Fault Tolerance through Provenance-Based Recovery.

Sven Köhler, Sean Riddle, Daniel Zinn, Timothy M. McPhillips, Bertram Ludäscher

Proceedings of the Scientific and Statistical Database Management, 2011

Scientific workflow design 2.0: Demonstrating streaming data collections in Kepler.

Lei Dou, Daniel Zinn, Timothy M. McPhillips, Sven Köhler, Sean Riddle, Shawn Bowers, Bertram Ludäscher

Proceedings of the 27th International Conference on Data Engineering, 2011

Towards Reliable, Performant Workflows for Streaming-Applications on Cloud Platforms.

Daniel Zinn, Quinn J. Hart, Timothy M. McPhillips, Bertram Ludäscher, Yogesh Simmhan, Michail Giakkoupis, Viktor K. Prasanna

Proceedings of the 11th IEEE/ACM International Symposium on Cluster, 2011

2010

WATERS: a Workflow for the Alignment, Taxonomy, and Ecology of Ribosomal Sequences.

Amber L. Hartman, Sean Riddle, Timothy M. McPhillips, Bertram Ludäscher, Jonathan A. Eisen

BMC Bioinform., 2010

2009

Scientific Workflows.

Bertram Ludäscher, Shawn Bowers, Timothy M. McPhillips

Proceedings of the Encyclopedia of Database Systems, 2009

Scientific workflow design for mere mortals.

Timothy M. McPhillips, Shawn Bowers, Daniel Zinn, Bertram Ludäscher

Future Gener. Comput. Syst., 2009

Exploring Scientific Workflow Provenance Using Hybrid Queries over Nested Data and Lineage Graphs.

Manish Kumar Anand, Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher

Proceedings of the Scientific and Statistical Database Management, 2009

Scientific workflow design with data assembly lines.

Daniel Zinn, Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher

Proceedings of the 4th Workshop on Workflows in Support of Large-Scale Science, 2009

X-CSR: Dataflow Optimization for Distributed XML Process Pipelines.

Daniel Zinn, Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher

Proceedings of the 25th International Conference on Data Engineering, 2009

Efficient provenance storage over nested data collections.

Manish Kumar Anand, Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher

Proceedings of the EDBT 2009, 2009

Scientific Workflows: Business as Usual?

Bertram Ludäscher, Mathias Weske, Timothy M. McPhillips, Shawn Bowers

Proceedings of the Business Process Management, 7th International Conference, 2009

Scientific Process Automation and Workflow Management.

Bertram Ludäscher, Ilkay Altintas, Shawn Bowers, Julian Cummings, Terence Critchlow, Ewa Deelman, David De Roure, Juliana Freire, Carole A. Goble, Matthew B. Jones, Scott Klasky, Timothy M. McPhillips, Norbert Podhorszki, Cláudio T. Silva, Ian J. Taylor, Mladen A. Vouk

Proceedings of the Scientific Data Management - Challenges, Technology, and Deployment., 2009

2008

Special Issue: The First Provenance Challenge.

Luc Moreau, Bertram Ludäscher, Ilkay Altintas, Roger S. Barga, Shawn Bowers, Steven P. Callahan, George Chin Jr., Ben Clifford, Shirley Cohen, Sarah Cohen Boulakia, Susan B. Davidson, Ewa Deelman, Luciano A. Digiampietri, Ian T. Foster, Juliana Freire, James Frew, Joe Futrelle, Tara Gibson, Yolanda Gil, Carole A. Goble, Jennifer Golbeck, Paul Groth, David A. Holland, Sheng Jiang, Jihie Kim, David Koop, Ales Krenek, Timothy M. McPhillips, Gaurang Mehta, Simon Miles, Dominic Metzger, Steve Munroe, Jim Myers, Beth Plale, Norbert Podhorszki, Varun Ratnakar, Emanuele Santos, Carlos Eduardo Scheidegger, Karen Schuchardt, Margo I. Seltzer, Yogesh L. Simmhan, Cláudio T. Silva, Peter Slaughter, Eric G. Stephan, Robert Stevens, Daniele Turi, Huy T. Vo, Michael Wilde, Jun Zhao, Yong Zhao

Concurr. Comput. Pract. Exp., 2008

From computation models to models of provenance: the RWS approach.

Bertram Ludäscher, Norbert Podhorszki, Ilkay Altintas, Shawn Bowers, Timothy M. McPhillips

Concurr. Comput. Pract. Exp., 2008

Provenance in collection-oriented scientific workflows.

Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher

Concurr. Comput. Pract. Exp., 2008

Flexible Scientific Workflow Modeling Using Frames, Templates, and Dynamic Embedding.

Anne H. H. Ngu, Shawn Bowers, Nicholas Haasch, Timothy M. McPhillips, Terence Critchlow

Proceedings of the Scientific and Statistical Database Management, 2008

Kepler/pPOD: Scientific Workflow and Provenance Support for Assembling the Tree of Life.

Shawn Bowers, Timothy M. McPhillips, Sean Riddle, Manish Kumar Anand, Bertram Ludäscher

Proceedings of the Provenance and Annotation of Data and Processes, 2008

2007

Provenance in Scientific Workflow Systems.

Susan B. Davidson, Sarah Cohen Boulakia, Anat Eyal, Bertram Ludäscher, Timothy M. McPhillips, Shawn Bowers, Manish Kumar Anand, Juliana Freire

IEEE Data Eng. Bull., 2007

Project Histories: Managing Data Provenance Across Collection-Oriented Scientific Workflow Runs.

Shawn Bowers, Timothy M. McPhillips, Martin Wu, Bertram Ludäscher

Proceedings of the Data Integration in the Life Sciences, 4th International Workshop, 2007

2006

A Model for User-Oriented Data Provenance in Pipelined Scientific Workflows.

Shawn Bowers, Timothy M. McPhillips, Bertram Ludäscher, Shirley Cohen, Susan B. Davidson

Proceedings of the Provenance and Annotation of Data, 2006

Scientific Workflows: More e-Science Mileage from Cyberinfrastructure.

Bertram Ludäscher, Shawn Bowers, Timothy M. McPhillips, Norbert Podhorszki

Proceedings of the Second International Conference on e-Science and Grid Technologies (e-Science 2006), 2006

Collection-Oriented Scientific Workflows for Integrating and Analyzing Biological Data.

Timothy M. McPhillips, Shawn Bowers, Bertram Ludäscher

Proceedings of the Data Integration in the Life Sciences, Third International Workshop, 2006

2005

An approach for pipelining nested collections in scientific workflows.

Timothy M. McPhillips, Shawn Bowers

SIGMOD Rec., 2005