Timothy G. Vaughan

According to our database, Timothy G. Vaughan authored at least 8 papers between 2010 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

<i>ReMASTER:</i> improved phylodynamic simulation for BEAST 2.7.

Timothy G. Vaughan

Bioinform., January, 2024

EpiFusion: Joint inference of the effective reproduction number by integrating phylodynamic and epidemiological modelling with particle filtering.

Ciara E. Judge, Timothy G. Vaughan, Timothy Russell, Sam Abbott, Louis du Plessis, Tanja Stadler, Oliver Brady, Sarah Hill

PLoS Comput. Biol., 2024

2022

TreeKnit: Inferring ancestral reassortment graphs of influenza viruses.

Pierre Barrat-Charlaix, Timothy G. Vaughan, Richard A. Neher

PLoS Comput. Biol., 2022

2019

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.

Remco R. Bouckaert, Timothy G. Vaughan, Joëlle Barido-Sottani, Sebastián Duchêne, Mathieu Fourment, Alexandra Gavryushkina, Joseph Heled, Graham Jones, Denise Kühnert, Nicola De Maio, Michael Matschiner, Fábio K. Mendes, Nicola F. Müller, Huw A. Ogilvie, Louis du Plessis, Alex Popinga, Andrew Rambaut, David A. Rasmussen, Igor Siveroni, Marc A. Suchard, Chieh-Hsi Wu, Dong Xie, Chi Zhang, Tanja Stadler, Alexei J. Drummond

PLoS Comput. Biol., 2019

2017

IcyTree: rapid browser-based visualization for phylogenetic trees and networks.

Timothy G. Vaughan

Bioinform., 2017

2014

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis.

Remco R. Bouckaert, Joseph Heled, Denise Kühnert, Timothy G. Vaughan, Chieh-Hsi Wu, Dong Xie, Marc A. Suchard, Andrew Rambaut, Alexei J. Drummond

PLoS Comput. Biol., 2014

Efficient Bayesian inference under the structured coalescent.

Timothy G. Vaughan, Denise Kühnert, Alex Popinga, David Welch, Alexei J. Drummond

Bioinform., 2014

2010

A retrodictive stochastic simulation algorithm.

Timothy G. Vaughan, Peter D. Drummond, Alexei J. Drummond

J. Comput. Phys., 2010