Timothy A. Miller

Orcid: 0000-0003-4513-403X

According to our database1, Timothy A. Miller authored at least 89 papers between 2005 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
Cumulus: a federated electronic health record-based learning system powered by Fast Healthcare Interoperability Resources and artificial intelligence.
J. Am. Medical Informatics Assoc., 2024

Automated stratification of trauma injury severity across multiple body regions using multi-modal, multi-class machine learning models.
J. Am. Medical Informatics Assoc., 2024

Lessons Learned on Information Retrieval in Electronic Health Records: A Comparison of Embedding Models and Pooling Strategies.
CoRR, 2024

When Raw Data Prevails: Are Large Language Model Embeddings Effective in Numerical Data Representation for Medical Machine Learning Applications?
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2024, 2024

2023
Improving model transferability for clinical note section classification models using continued pretraining.
J. Am. Medical Informatics Assoc., December, 2023

Representing and utilizing clinical textual data for real world studies: An OHDSI approach.
J. Biomed. Informatics, June, 2023

DR.BENCH: Diagnostic Reasoning Benchmark for Clinical Natural Language Processing.
J. Biomed. Informatics, February, 2023

Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition.
Database J. Biol. Databases Curation, February, 2023

The impact of using an AI chatbot to respond to patient messages.
CoRR, 2023

Considerations for health care institutions training large language models on electronic health records.
CoRR, 2023

Leveraging A Medical Knowledge Graph into Large Language Models for Diagnosis Prediction.
CoRR, 2023

Natural language processing to automatically extract the presence and severity of esophagitis in notes of patients undergoing radiotherapy.
CoRR, 2023

Progress Note Understanding - Assessment and Plan Reasoning: Overview of the 2022 N2C2 Track 3 Shared Task.
CoRR, 2023

End-to-end clinical temporal information extraction with multi-head attention.
Proceedings of the 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, 2023

Two-Stage Fine-Tuning for Improved Bias and Variance for Large Pretrained Language Models.
Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2023

Multi-Task Training with In-Domain Language Models for Diagnostic Reasoning.
Proceedings of the 5th Clinical Natural Language Processing Workshop, 2023

2022
Confederated learning in healthcare: Training machine learning models using disconnected data separated by individual, data type and identity for Large-Scale health system Intelligence.
J. Biomed. Informatics, 2022

A scoping review of publicly available language tasks in clinical natural language processing.
J. Am. Medical Informatics Assoc., 2022

Classifying unstructured electronic consult messages to understand primary care physician specialty information needs.
J. Am. Medical Informatics Assoc., 2022

Summarizing Patients Problems from Hospital Progress Notes Using Pre-trained Sequence-to-Sequence Models.
CoRR, 2022

Hierarchical Annotation for Building A Suite of Clinical Natural Language Processing Tasks: Progress Note Understanding.
Proceedings of the Thirteenth Language Resources and Evaluation Conference, 2022

2021
Deep representation learning of patient data from Electronic Health Records (EHR): A systematic review.
J. Biomed. Informatics, 2021

Pre-training phenotyping classifiers.
J. Biomed. Informatics, 2021

Depth-Bounded Statistical PCFG Induction as a Model of Human Grammar Acquisition.
Comput. Linguistics, 2021

SemEval-2021 Task 10: Source-Free Domain Adaptation for Semantic Processing.
Proceedings of the 15th International Workshop on Semantic Evaluation, 2021

EntityBERT: Entity-centric Masking Strategy for Model Pretraining for the Clinical Domain.
Proceedings of the 20th Workshop on Biomedical Language Processing, 2021

The SMART Cumulus Text-to-FHIR NLP Pipeline.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020
Does BERT need domain adaptation for clinical negation detection?
J. Am. Medical Informatics Assoc., 2020

Federated pretraining and fine tuning of BERT using clinical notes from multiple silos.
CoRR, 2020

A BERT-based One-Pass Multi-Task Model for Clinical Temporal Relation Extraction.
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing, 2020

Learning Hierarchical Transformer-based Representations of Clinical Notes.
Proceedings of the AMIA 2020, 2020

Deep Representation Learning of Patient Data from Electronic Health Records: A Systematic Review.
Proceedings of the AMIA 2020, 2020

Learning Patient Representations from Electronic Health Records across Diverse Data Types.
Proceedings of the AMIA 2020, 2020

Understanding eConsult Triage Behavior with Natural Language Processing.
Proceedings of the AMIA 2020, 2020

Defining and Learning Refined Temporal Relations in the Clinical Narrative.
Proceedings of the 11th International Workshop on Health Text Mining and Information Analysis, 2020

Extracting Relations between Radiotherapy Treatment Details.
Proceedings of the 3rd Clinical Natural Language Processing Workshop, 2020

2019
Supervised methods to extract clinical events from cardiology reports in Italian.
J. Biomed. Informatics, 2019

Toward a clinical text encoder: pretraining for clinical natural language processing with applications to substance misuse.
J. Am. Medical Informatics Assoc., 2019

Confederated Machine Learning on Horizontally and Vertically Separated Medical Data for Large-Scale Health System Intelligence.
CoRR, 2019

Simplified Neural Unsupervised Domain Adaptation.
Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2019

Two-stage Federated Phenotyping and Patient Representation Learning.
Proceedings of the 18th BioNLP Workshop and Shared Task, 2019

Towards a Universal Document-Level Clinical Text Encoder: Methods for Neural Network Pre-training with Applications to Substance Misuse.
Proceedings of the AMIA 2019, 2019

Unsupervised Learning of PCFGs with Normalizing Flow.
Proceedings of the 57th Conference of the Association for Computational Linguistics, 2019

Cross-document coreference: An approach to capturing coreference without context.
Proceedings of the Tenth International Workshop on Health Text Mining and Information Analysis LOUHI@EMNLP 2019, 2019

2018
Unsupervised Grammar Induction with Depth-bounded PCFG.
Trans. Assoc. Comput. Linguistics, 2018

FADL: Federated-Autonomous Deep Learning for Distributed Electronic Health Record.
CoRR, 2018

Learning Patient Representations from Text.
Proceedings of the Seventh Joint Conference on Lexical and Computational Semantics, 2018

Spotting Spurious Data with Neural Networks.
Proceedings of the 2018 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2018

Depth-bounding is effective: Improvements and Evaluation of Unsupervised PCFG Induction.
Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, Brussels, Belgium, October 31, 2018

Self-training improves Recurrent Neural Networks performance for Temporal Relation Extraction.
Proceedings of the Ninth International Workshop on Health Text Mining and Information Analysis, 2018

2017
Towards generalizable entity-centric clinical coreference resolution.
J. Biomed. Informatics, 2017

Repeat before Forgetting: Spaced Repetition for Efficient and Effective Training of Neural Networks.
Proceedings of the 2017 Conference on Empirical Methods in Natural Language Processing, 2017

Neural Temporal Relation Extraction.
Proceedings of the 15th Conference of the European Chapter of the Association for Computational Linguistics, 2017

Unsupervised Domain Adaptation for Clinical Negation Detection.
Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017

Representations of Time Expressions for Temporal Relation Extraction with Convolutional Neural Networks.
Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017

DeepPhe - A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records.
Proceedings of the AMIA 2017, 2017

Recurrent Neural Network Architectures for Event Extraction from Italian Medical Reports.
Proceedings of the Artificial Intelligence in Medicine, 2017

2016
Multilayered temporal modeling for the clinical domain.
J. Am. Medical Informatics Assoc., 2016

Memory-Bounded Left-Corner Unsupervised Grammar Induction on Child-Directed Input.
Proceedings of the COLING 2016, 2016

Unsupervised Document Classification with Informed Topic Models.
Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016

Improving Temporal Relation Extraction with Training Instance Augmentation.
Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016

Feature Portability in Cross-domain Clinical Coreference.
Proceedings of the AMIA 2016, 2016

2015
Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record.
J. Am. Medical Informatics Assoc., 2015

Extracting Time Expressions from Clinical Text.
Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, 2015

Robust Sentence Segmentation for Clinical Text.
Proceedings of the AMIA 2015, 2015

Semi-supervised Learning for Phenotyping Tasks.
Proceedings of the AMIA 2015, 2015

2014
Temporal Annotation in the Clinical Domain.
Trans. Assoc. Comput. Linguistics, 2014

Discovering body site and severity modifiers in clinical texts.
J. Am. Medical Informatics Assoc., 2014

Descending-Path Convolution Kernel for Syntactic Structures.
Proceedings of the 52nd Annual Meeting of the Association for Computational Linguistics, 2014

2013
Active Learning for Phenotyping Tasks.
Proceedings of the Workshop on NLP for Medicine and Biology associated with RANLP 2013, 2013

Discovering Temporal Narrative Containers in Clinical Text.
Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, 2013

Negation's Not Solved: Reconsidering Negation Annotation and Evaluation.
Proceedings of the AMIA 2013, 2013

Discovering Time Expressions in Clinical Text.
Proceedings of the AMIA 2013, 2013

Automatic Prediction of Rheumatoid Arthritis Disease Activity from the Electronic Medical Records.
Proceedings of the AMIA 2013, 2013

Discovering Body Site and Severity Modifiers in Clinical Texts.
Proceedings of the AMIA 2013, 2013

2012
A system for coreference resolution for the clinical narrative.
J. Am. Medical Informatics Assoc., 2012

Active Learning for Coreference Resolution.
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

2011
A Pronoun Anaphora Resolution System based on Factorial Hidden Markov Models.
Proceedings of the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies, 2011

2010
Broad-Coverage Parsing Using Human-Like Memory Constraints.
Comput. Linguistics, 2010

HHMM Parsing with Limited Parallelism.
Proceedings of the 2010 Workshop on Cognitive Modeling and Computational Linguistics, 2010

2009
Parsing Speech Repair without Specialized Grammar Symbols.
Proceedings of the ACL 2009, 2009

2008
Toward a Psycholinguistically-Motivated Model of Language Processing.
Proceedings of the COLING 2008, 2008

A Syntactic Time-Series Model for Parsing Fluent and Disfluent Speech.
Proceedings of the COLING 2008, 2008

A Unified Syntactic Model for Parsing Fluent and Disfluent Speech.
Proceedings of the ACL 2008, 2008

2007
Elements of a spoken language programming interface for robots.
Proceedings of the Second ACM SIGCHI/SIGART Conference on Human-Robot Interaction, 2007

2006
Dynamic evidence models in a DBN phone recognizer.
Proceedings of the Ninth International Conference on Spoken Language Processing, 2006

2005
Integrating denotational meaning into a DBN language model.
Proceedings of the 9th European Conference on Speech Communication and Technology, 2005

Exploiting a sensed environment to improve human-agent communication.
Proceedings of the 4th International Joint Conference on Autonomous Agents and Multiagent Systems (AAMAS 2005), 2005

Using Volunteers to Annotate Biomedical Corpora for Anaphora Resolution.
Proceedings of the Knowledge Collection from Volunteer Contributors, 2005


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