Tiina Manninen

According to our database, Tiina Manninen authored at least 17 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

CellRemorph: A Toolkit for Transforming, Selecting, and Slicing 3D Cell Structures on the Road to Morphologically Detailed Astrocyte Simulations.

Laura Keto, Tiina Manninen

Neuroinformatics, July, 2023

Analysis of Network Models with Neuron-Astrocyte Interactions.

Tiina Manninen, Jugoslava Acimovic, Marja-Leena Linne

Neuroinformatics, April, 2023

2020

Astrocyte-mediated spike-timing-dependent long-term depression modulates synaptic properties in the developing cortex.

Tiina Manninen, Ausra Saudargiene, Marja-Leena Linne

PLoS Comput. Biol., 2020

2018

Challenges in Reproducibility, Replicability, and Comparability of Computational Models and Tools for Neuronal and Glial Networks, Cells, and Subcellular Structures.

Tiina Manninen, Jugoslava Acimovic, Riikka Havela, Heidi Teppola, Marja-Leena Linne

Frontiers Neuroinformatics, 2018

Computational Models for Calcium-Mediated Astrocyte Functions.

Tiina Manninen, Riikka Havela, Marja-Leena Linne

Frontiers Comput. Neurosci., 2018

2017

Sustainable computational science: the ReScience initiative.

Nicolas P. Rougier, Konrad Hinsen, Frédéric Alexandre, Thomas Arildsen, Lorena A. Barba, Fabien C. Y. Benureau, C. Titus Brown, Pierre de Buyl, Ozan Caglayan, Andrew P. Davison, Marc-André Delsuc, Georgios Detorakis, Alexandra K. Diem, Damien Drix, Pierre Enel, Benoît Girard, Olivia Guest, Matt G. Hall, Rafael Neto Henriques, Xavier Hinaut, Kamil S. Jaron, Mehdi Khamassi, Almar Klein, Tiina Manninen, Pietro Marchesi, Dan McGlinn, Christoph Metzner, Owen L. Petchey, Hans Ekkehard Plesser, Timothée Poisot, Karthik Ram, Yoav Ram, Etienne B. Roesch, Cyrille Rossant, Vahid Rostami, Aaron Shifman, Jemma Stachelek, Marcel Stimberg, Frank Stollmeier, Federico Vaggi, Guillaume Viejo, Julien Vitay, Anya E. Vostinar, Roman Yurchak, Tiziano Zito

PeerJ Comput. Sci., 2017

Reproducibility and Comparability of Computational Models for Astrocyte Calcium Excitability.

Tiina Manninen, Riikka Havela, Marja-Leena Linne

Frontiers Neuroinformatics, 2017

Modeling Neuron-Astrocyte Interactions: Towards Understanding Synaptic Plasticity and Learning in the Brain.

Riikka Havela, Tiina Manninen, Ausra Saudargiene, Marja-Leena Linne

Proceedings of the Intelligent Computing Theories and Application, 2017

2011

Modeling Signal Transduction Leading to Synaptic Plasticity: Evaluation and Comparison of Five Models.

Tiina Manninen, Katri Hituri, Eeva Toivari, Marja-Leena Linne

EURASIP J. Bioinform. Syst. Biol., 2011

Computational study of noise in a large signal transduction network.

Jukka Intosalmi, Tiina Manninen, Keijo Ruohonen, Marja-Leena Linne

BMC Bioinform., 2011

2010

Postsynaptic Signal Transduction Models for Long-Term Potentiation and Depression.

Tiina Manninen, Katri Hituri, Jeanette Hellgren Kotaleski, Kim T. Blackwell, Marja-Leena Linne

Frontiers Comput. Neurosci., 2010

Comparison of discrete- and continuous-state stochastic methods to model neuronal signal transduction.

Tiina Manninen, Daniel X. Keller

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

2006

A novel approach to model neuronal signal transduction using stochastic differential equations.

Tiina Manninen, Marja-Leena Linne, Keijo Ruohonen

Neurocomputing, 2006

Developing Itô stochastic differential equation models for neuronal signal transduction pathways.

Tiina Manninen, Marja-Leena Linne, Keijo Ruohonen

Comput. Biol. Chem., 2006

Discrete stochastic simulation of cell signaling: comparison of computational tools.

Tiina Manninen, Eeva Makiraatikka, Antti Ylipää, Antti Pettinen, Kalle Leinonen, Marja-Leena Linne

Proceedings of the 28th International Conference of the IEEE Engineering in Medicine and Biology Society, 2006

2005

Simulation tools for biochemical networks: evaluation of performance and usability.

Antti Pettinen, Tommi Aho, Olli-Pekka Smolander, Tiina Manninen, Antti Saarinen, Kaisa-Leena Taattola, Olli Yli-Harja, Marja-Leena Linne

Bioinform., 2005

2004

A model integrating the cerebellar granule neuron excitability and calcium signaling pathways.

Marja-Leena Linne, Tiina Manninen, Tuula O. Jalonen

Neurocomputing, 2004