Thomas Manke

According to our database, Thomas Manke authored at least 14 papers between 2004 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

pyGenomeTracks: reproducible plots for multivariate genomic datasets.

Lucille Lopez-Delisle, Leily Rabbani, Joachim Wolff, Vivek Bhardwaj, Rolf Backofen, Björn A. Grüning, Fidel Ramírez, Thomas Manke

Bioinform., 2021

2020

Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization.

Joachim Wolff, Leily Rabbani, Ralf Gilsbach, Gautier Richard, Thomas Manke, Rolf Backofen, Björn A. Grüning

Nucleic Acids Res., 2020

2019

snakePipes: facilitating flexible, scalable and integrative epigenomic analysis.

Vivek Bhardwaj, Steffen Heyne, Katarzyna Sikora, Leily Rabbani, Michael Rauer, Fabian Kilpert, Andreas S. Richter, Devon Patrick Ryan, Thomas Manke

Bioinform., 2019

Parkour LIMS: high-quality sample preparation in next generation sequencing.

Evgeny Anatskiy, Devon Patrick Ryan, Björn A. Grüning, Laura Arrigoni, Thomas Manke, Ulrike Bönisch

Bioinform., 2019

2018

Galaxy HiCExplorer: a web server for reproducible Hi-C data analysis, quality control and visualization.

Joachim Wolff, Vivek Bhardwaj, Stephan Nothjunge, Gautier Richard, Gina Renschler, Ralf Gilsbach, Thomas Manke, Rolf Backofen, Fidel Ramírez, Björn A. Grüning

Nucleic Acids Res., 2018

2017

DHX9 suppresses RNA processing defects originating from the <i>Alu</i> invasion of the human genome.

Tugçe Aktas, Ibrahim Avsar Ilik, Daniel Maticzka, Vivek Bhardwaj, Cecilia Pessoa Rodrigues, Gerhard Mittler, Thomas Manke, Rolf Backofen, Asifa Akhtar

Nat., 2017

2016

deepTools2: a next generation web server for deep-sequencing data analysis.

Fidel Ramírez, Devon Patrick Ryan, Björn A. Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S. Richter, Steffen Heyne, Friederike Dündar, Thomas Manke

Nucleic Acids Res., 2016

2014

deepTools: a flexible platform for exploring deep-sequencing data.

Fidel Ramírez, Friederike Dündar, Sarah Diehl, Björn A. Grüning, Thomas Manke

Nucleic Acids Res., 2014

2013

ChroMoS: an integrated web tool for SNP classification, prioritization and functional interpretation.

Maxim Barenboim, Thomas Manke

Bioinform., 2013

2009

PASTAA: identifying transcription factors associated with sets of co-regulated genes.

Helge G. Roider, Thomas Manke, Sean O'Keeffe, Martin Vingron, Stefan A. Haas

Bioinform., 2009

2008

Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions.

Thomas Manke, Helge G. Roider, Martin Vingron

PLoS Comput. Biol., 2008

Prioritization of gene regulatory interactions from large-scale modules in yeast.

Ho-Joon Lee, Thomas Manke, Ricardo Bringas, Martin Vingron

BMC Bioinform., 2008

2007

Predicting transcription factor affinities to DNA from a biophysical model.

Helge G. Roider, Aditi Kanhere, Thomas Manke, Martin Vingron

Bioinform., 2007

2004

Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome.

Thomas Manke, Christoph Dieterich, Martin Vingron

Proceedings of the Regulatory Genomics, 2004