Thomas M. Oinn

According to our database, Thomas M. Oinn authored at least 25 papers between 2000 and 2011.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2011

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.

Toshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul Jean Pierre Bonnal, José María Fernández, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd W. Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, E. Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas H. Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi

J. Biomed. Semant., 2011

2010

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows.

Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi

J. Biomed. Semant., 2010

Taverna, Reloaded.

Paolo Missier, Stian Soiland-Reyes, Stuart Owen, Wei Tan, Aleksandra Nenadic, Ian Dunlop, Alan R. Williams, Tom Oinn, Carole A. Goble

Proceedings of the Scientific and Statistical Database Management, 2010

2009

The data playground: An intuitive workflow specification environment.

Andrew Gibson, Matthew Gamble, Katy Wolstencroft, Tom Oinn, Carole A. Goble, Khalid Belhajjame, Paolo Missier

Future Gener. Comput. Syst., 2009

2008

Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data.

Peter Li, Juan I. Castrillo, Giles Velarde, Ingo Wassink, Stian Soiland-Reyes, Stuart Owen, David Withers, Tom Oinn, Matthew R. Pocock, Carole A. Goble, Stephen G. Oliver, Douglas B. Kell

BMC Bioinform., 2008

Automated manipulation of systems biology models using libSBML within Taverna workflows.

Peter Li, Tom Oinn, Stian Soiland, Douglas B. Kell

Bioinform., 2008

The Taverna Interaction Service: enabling manual interaction in workflows.

Anders Lanzén, Tom Oinn

Bioinform., 2008

Metadata Management in the Taverna Workflow System.

Khalid Belhajjame, Katy Wolstencroft, Óscar Corcho, Tom Oinn, Franck Tanoh, Alan R. Williams, Carole A. Goble

Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008), 2008

2007

Taverna Workflows: Syntax and Semantics.

Daniele Turi, Paolo Missier, Carole A. Goble, David De Roure, Tom Oinn

Proceedings of the Third International Conference on e-Science and Grid Computing, 2007

The Data Playground: An Intuitive Workflow Specification Environment.

Andrew Gibson, Matthew Gamble, Katy Wolstencroft, Tom Oinn, Carole A. Goble

Proceedings of the Third International Conference on e-Science and Grid Computing, 2007

^myGrid and UTOPIA: An Integrated Approach to Enacting and Visualising in Silico Experiments in the Life Sciences.

Steve Pettifer, Katy Wolstencroft, Pinar Alper, Teresa K. Attwood, Alain Coletta, Carole A. Goble, Peter Li, Philip McDermott, James Marsh, Tom Oinn, James Sinnott, David Thorne

Proceedings of the Data Integration in the Life Sciences, 4th International Workshop, 2007

Taverna/^myGrid: Aligning a Workflow System with the Life Sciences Community.

Tom Oinn, Peter Li, Douglas B. Kell, Carole A. Goble, Antoon Goderis, Robert Mark Greenwood, Duncan Hull, Robert Stevens, Daniele Turi, Jun Zhao

Proceedings of the Workflows for e-Science, Scientific Workflows for Grids., 2007

2006

Taverna: a tool for building and running workflows of services.

Duncan Hull, Katy Wolstencroft, Robert Stevens, Carole A. Goble, Matthew R. Pocock, Peter Li, Tom Oinn

Nucleic Acids Res., 2006

Taverna: lessons in creating a workflow environment for the life sciences.

Thomas M. Oinn, Robert Mark Greenwood, Matthew Addis, Mahmut Nedim Alpdemir, Justin Ferris, Kevin Glover, Carole A. Goble, Antoon Goderis, Duncan Hull, Darren Marvin, Peter Li, Phillip W. Lord, Matthew R. Pocock, Martin Senger, Robert Stevens, Anil Wipat, Chris Wroe

Concurr. Comput. Pract. Exp., 2006

2005

Contextualised Workflow Execution in MyGrid.

Mahmut Nedim Alpdemir, Arijit Mukherjee, Norman W. Paton, Alvaro A. A. Fernandes, Paul Watson, Kevin Glover, Chris Greenhalgh, Thomas M. Oinn, Hannah J. Tipney

Proceedings of the Advances in Grid Computing, 2005

Panoply of Utilities in Taverna.

Katy Wolstencroft, Thomas M. Oinn, Carole A. Goble, Justin Ferris, Chris Wroe, Phillip W. Lord, Kevin Glover, Robert Stevens

Proceedings of the First International Conference on e-Science and Grid Technologies (e-Science 2005), 2005

2004

Taverna: a tool for the composition and enactment of bioinformatics workflows.

Thomas M. Oinn, Matthew Addis, Justin Ferris, Darren Marvin, Martin Senger, Robert Mark Greenwood, Tim Carver, Kevin Glover, Matthew R. Pocock, Anil Wipat, Peter Li

Bioinform., 2004

Delivering web service coordination capability to users.

Thomas M. Oinn, Matthew Addis, Justin Ferris, Darren Marvin, Robert Mark Greenwood, Carole A. Goble, Anil Wipat, Peter Li, Tim Carver

Proceedings of the 13th international conference on World Wide Web, 2004

Exploring Williams-Beuren syndrome using ^myGrid.

Robert D. Stevens, Hannah J. Tipney, Chris Wroe, Thomas M. Oinn, Martin Senger, Phillip W. Lord, Carole A. Goble, Andy Brass, M. Tassabehji

Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

2003

Talisman - rapid application development for the grid.

Thomas M. Oinn

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

On the Use of Agents in BioInformatics Grid.

Luc Moreau, Simon Miles, Carole A. Goble, Robert Mark Greenwood, Vijay Dialani, Matthew Addis, Mahmut Nedim Alpdemir, Rich Cawley, David De Roure, Justin Ferris, Robert J. Gaizauskas, Kevin Glover, Chris Greenhalgh, Peter Li, Xiaojian Liu, Phillip W. Lord, Michael Luck, Darren Marvin, Thomas M. Oinn, Norman W. Paton, Steve Pettifer, Milena V. Radenkovic, Angus Roberts, Alan J. Robinson, Tom Rodden, Martin Senger, Nick Sharman, Robert Stevens, Brian Warboys, Anil Wipat, Chris Wroe

Proceedings of the 3rd IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2003), 2003

2002

Interactive InterPro-based comparisons of proteins in whole genomes.

Alexander Kanapin, Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Florence Servant, Evgeni M. Zdobnov

Bioinform., 2002

2001

The InterPro database, an integrated documentation resource for protein families, domains and functional sites.

Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov

Nucleic Acids Res., 2001

2000

InterPro-an integrated documentation resource for protein families, domains and functional sites.

Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov

Bioinform., 2000

Proteome Analysis: Application of InterPro and CluSTr for the Functional Classification of Proteins in Whole Genomes.

Margaret Biswas, Rolf Apweiler, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Evgeni M. Zdobnov

Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000