Thomas M. Bartol

According to our database1, Thomas M. Bartol authored at least 18 papers between 2001 and 2024.

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Bibliography

2024
Synaptic Information Storage Capacity Measured With Information Theory.
Neural Comput., May, 2024

2022
Multiscale modeling of presynaptic dynamics from molecular to mesoscale.
PLoS Comput. Biol., 2022

2021
Physics-based machine learning for modeling stochastic IP3-dependent calcium dynamics.
CoRR, 2021

2020
Interactions between calmodulin and neurogranin govern the dynamics of CaMKII as a leaky integrator.
PLoS Comput. Biol., 2020

2019
A multi-state model of the CaMKII dodecamer suggests a role for calmodulin in maintenance of autophosphorylation.
PLoS Comput. Biol., 2019

Deep Learning Moment Closure Approximations using Dynamic Boltzmann Distributions.
CoRR, 2019

2014
MCell.
Proceedings of the Encyclopedia of Computational Neuroscience, 2014

Multi-state Modeling of Biomolecules.
PLoS Comput. Biol., 2014

VolRoverN: Enhancing Surface and Volumetric Reconstruction for Realistic Dynamical Simulation of Cellular and Subcellular Function.
Neuroinformatics, 2014

2010
Modelling Vesicular Release at Hippocampal Synapses.
PLoS Comput. Biol., 2010

2008
Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces.
SIAM J. Sci. Comput., 2008

2007
Toward Petascale Simulation of Cellular Microphysiology.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2005
Development of a model for microphysiological simulations - Small nodes of ranvier from peripheral nerves of mice reconstructed by electron tomography.
Neuroinformatics, 2005

2004
The Virtual Instrument: Support for Grid-Enabled Mcell Simulations.
Int. J. High Perform. Comput. Appl., 2004

A Large Scale Monte Carlo Simulator for Cellular Microphysiology.
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004

2003
Spatially Realistic Computational Physiology: Past, Present and Future.
Proceedings of the Parallel Computing: Software Technology, 2003

2001
An MCell model of calcium dynamics and frequency-dependence of calmodulin activation in dendritic spines.
Neurocomputing, 2001

Distributing MCell Simulations on the Grid.
Int. J. High Perform. Comput. Appl., 2001


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