Thomas M. Bartol

According to our database, Thomas M. Bartol authored at least 19 papers between 2001 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Synaptic Information Storage Capacity Measured With Information Theory.

Mohammad Samavat, Thomas M. Bartol, Kristen M. Harris, Terrence J. Sejnowski

Neural Comput., May, 2024

MCell4 with BioNetGen: A Monte Carlo simulator of rule-based reaction-diffusion systems with Python interface.

Adam Husár, Mariam Ordyan, Guadalupe C. Garcia, Joel G. Yancey, Ali Sinan Saglam, James R. Faeder, Thomas M. Bartol, Mary B. Kennedy, Terrence J. Sejnowski

PLoS Comput. Biol., 2024

2022

Multiscale modeling of presynaptic dynamics from molecular to mesoscale.

Jonathan W. Garcia, Thomas M. Bartol, Terrence J. Sejnowski

PLoS Comput. Biol., 2022

2021

Physics-based machine learning for modeling stochastic IP3-dependent calcium dynamics.

Oliver K. Ernst, Tom Bartol, Terrence J. Sejnowski, Eric Mjolsness

CoRR, 2021

2020

Interactions between calmodulin and neurogranin govern the dynamics of CaMKII as a leaky integrator.

Mariam Ordyan, Tom Bartol, Mary B. Kennedy, Padmini Rangamani, Terrence J. Sejnowski

PLoS Comput. Biol., 2020

2019

A multi-state model of the CaMKII dodecamer suggests a role for calmodulin in maintenance of autophosphorylation.

Matthew C. Pharris, Neal M. Patel, Tyler G. VanDyk, Thomas M. Bartol, Terrence J. Sejnowski, Mary B. Kennedy, Melanie I. Stefan, Tamara Kinzer-Ursem

PLoS Comput. Biol., 2019

Deep Learning Moment Closure Approximations using Dynamic Boltzmann Distributions.

Oliver K. Ernst, Tom Bartol, Terrence J. Sejnowski, Eric Mjolsness

CoRR, 2019

2014

MCell.

Thomas M. Bartol, Markus Dittrich, James R. Faeder

Proceedings of the Encyclopedia of Computational Neuroscience, 2014

Multi-state Modeling of Biomolecules.

Melanie I. Stefan, Thomas M. Bartol, Terrence J. Sejnowski, Mary B. Kennedy

PLoS Comput. Biol., 2014

VolRoverN: Enhancing Surface and Volumetric Reconstruction for Realistic Dynamical Simulation of Cellular and Subcellular Function.

John Edwards, Eric Daniel, Justin Kinney, Thomas M. Bartol, Terrence J. Sejnowski, Daniel Johnston, Kristen M. Harris, Chandrajit L. Bajaj

Neuroinformatics, 2014

2010

Modelling Vesicular Release at Hippocampal Synapses.

Suhita Nadkarni, Thomas M. Bartol, Terrence J. Sejnowski, Herbert Levine

PLoS Comput. Biol., 2010

2008

Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces.

Rex A. Kerr, Thomas M. Bartol, Boris Kaminsky, Markus Dittrich, Jen-Chien Jack Chang, Scott B. Baden, Terrence J. Sejnowski, Joel R. Stiles

SIAM J. Sci. Comput., 2008

2007

Toward Petascale Simulation of Cellular Microphysiology.

Scott B. Baden, Terrence J. Sejnowski, Thomas M. Bartol, Joel R. Stiles

Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2005

Development of a model for microphysiological simulations - Small nodes of ranvier from peripheral nerves of mice reconstructed by electron tomography.

Gina E. Sosinsky, Thomas J. Deerinck, Rocco Greco, Casey H. Buitenhuys, Thomas M. Bartol, Mark H. Ellisman

Neuroinformatics, 2005

2004

The Virtual Instrument: Support for Grid-Enabled Mcell Simulations.

Henri Casanova, Francine Berman, Thomas M. Bartol, Erhan Gokcay, Terrence J. Sejnowski, Adam Birnbaum, Jack J. Dongarra, Michelle Miller, Mark H. Ellisman, Marcio Faerman, Graziano Obertelli, Richard Wolski, Stuart M. Pomerantz, Joel R. Stiles

Int. J. High Perform. Comput. Appl., 2004

A Large Scale Monte Carlo Simulator for Cellular Microphysiology.

Gregory T. Balls, Scott B. Baden, Tilman Kispersky, Thomas M. Bartol, Terrence J. Sejnowski

Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004

2003

Spatially Realistic Computational Physiology: Past, Present and Future.

Joel R. Stiles, W. C. Ford, J. M. Pattillo, Thomas E. Deerinck, Mark H. Ellisman, Thomas M. Bartol, Terrence J. Sejnowski

Proceedings of the Parallel Computing: Software Technology, 2003

2001

An MCell model of calcium dynamics and frequency-dependence of calmodulin activation in dendritic spines.

Kevin M. Franks, Thomas M. Bartol, Terrence J. Sejnowski

Neurocomputing, 2001

Distributing MCell Simulations on the Grid.

Henri Casanova, Thomas M. Bartol, Joel R. Stiles, Francine Berman

Int. J. High Perform. Comput. Appl., 2001