Thomas Lengauer

Bioinform., 2004

Arby: automatic protein structure prediction using profile-profile alignment and confidence measures.

[BibT_eX]

[DOI]

Bioinform., 2004

The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources.

[BibT_eX]

[DOI]

Bioinform., 2004

Learning Mixtures of Localized Rules by Maximizing the Area Under the ROC Curve.

[BibT_eX]

Tobias Sing

Niko Beerenwinkel

Proceedings of the ROC Analysis in Artificial Intelligence, 1st International Workshop, 2004

2003

Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2003

Parallel 'go with the winners' algorithms in distributed memory models.

[BibT_eX]

[DOI]

J. Parallel Distributed Comput., 2003

Microarrays: How Many Do You Need?

[BibT_eX]

[DOI]

J. Comput. Biol., 2003

Disease-associated variants in PYPAF1 and NOD2 result in similar alterations of conserved sequence.

[BibT_eX]

[DOI]

Mario Albrecht

Stefan Schreiber

Bioinform., 2003

Pyranose Oxidase Identified as A Member of the GMC Oxidoreductase Family.

[BibT_eX]

[DOI]

Mario Albrecht

Bioinform., 2003

Methods for optimizing antiviral combination therapies.

[BibT_eX]

[DOI]

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

Analyzing resistance phenomena in HIV with bioinformatics methods.

[BibT_eX]

Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003

2002

Diversity and complexity of HIV-1 drug resistance: A bioinformatics approach to predicting phenotype from genotype.

[BibT_eX]

[DOI]

Proc. Natl. Acad. Sci. USA, 2002

Preface: Special RECOMB 2001 Issue.

[BibT_eX]

[DOI]

J. Comput. Biol., 2002

Flexible docking under pharmacophore type constraints.

[BibT_eX]

[DOI]

J. Comput. Aided Mol. Des., 2002

ProML - the Protein Markup Language for specification of protein sequences, structures and families.

[BibT_eX]

[DOI]

Daniel Hanisch

Silico Biol., 2002

A hypergraph-based method for unification of existing protein structure- and sequence-families.

[BibT_eX]

[DOI]

Silico Biol., 2002

Improving fold recognition of protein threading by experimental distance constraints.

[BibT_eX]

[DOI]

Silico Biol., 2002

Confidence measures for protein fold recognition.

[BibT_eX]

[DOI]

Bioinform., 2002

Co-clustering of biological networks and gene expression data.

[BibT_eX]

Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

ECCB 2002 Organization.

[BibT_eX]

Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

Editorial.

[BibT_eX]

Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002

2001

Geno2pheno: Interpreting Genotypic HIV Drug Resistance Tests.

[BibT_eX]

[DOI]

IEEE Intell. Syst., 2001

Centralization: a new method for the normalization of gene expression data.

[BibT_eX]

Proceedings of the Ninth International Conference on Intelligent Systems for Molecular Biology, 2001

Confidence Measures for Fold Recognition.

[BibT_eX]

Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

A new Method for Unification of Existing Protein Structure- and Sequence-Families.

[BibT_eX]

Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

Identifying drug resistance-associated patterns in HIV genotypes.

[BibT_eX]

Proceedings of the Computer science and biology: Proceedings of the German Conference on Bioinformatics, 2001

Computational Biology at the Beginning of the Post-genomic Era.

[BibT_eX]

[DOI]

Proceedings of the Informatics - 10 Years Back. 10 Years Ahead., 2001

2000

Provably Good Global Routing of Integrated Circuits.

[BibT_eX]

[DOI]

Martin Lügering

SIAM J. Optim., 2000

A Simple Iterative Approach to Parameter Optimization.

[BibT_eX]

[DOI]

Alexander Zien

J. Comput. Biol., 2000

Computational methods for the structural alignment of molecules.

[BibT_eX]

[DOI]

J. Comput. Aided Mol. Des., 2000

Engineering support vector machine kernels that recognize translation initiation sites.

[BibT_eX]

[DOI]

Bioinform., 2000

Pathway analysis in metabolic databases via differential metabolic display (DMD).

[BibT_eX]

[DOI]

Robert Küffner

Bioinform., 2000

Protein Structure Prediction Methods for Drug Design.

[BibT_eX]

[DOI]

Briefings Bioinform., 2000

Analysis of Gene Expression Data with Pathway Scores.

[BibT_eX]

[DOI]

Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

Bioinformatics Problems Along the Process Line from Genomic Data to New Drugs.

[BibT_eX]

Proceedings of the German Conference on Bioinformatics (GCB 2000), 2000

Computational Biology - Algorithms and More.

[BibT_eX]

[DOI]

Proceedings of the Algorithms, 2000

1999

Decision tree-based formation of consensus protein secondary structure prediction.

[BibT_eX]

[DOI]

Joachim Selbig

Heinz-Theodor Mevissen

Bioinform., 1999

Docking of hydrophobic ligands with interaction-based matching algorithms.

[BibT_eX]

[DOI]

Bernd Kramer

Bioinform., 1999

Editorial. The Seventh International Conference on Intelligent Systems for Molecular Biology (ISMB'99).

[BibT_eX]

[DOI]

Bioinform., 1999

Invited Lecture: Discrete Optimization Methods for Packing Problems in Two and Three Dimensions - With Applications in the Textile and Car Manufacturing Industries.

[BibT_eX]

[DOI]

Proceedings of the Graph-Theoretic Concepts in Computer Science, 1999

Application of Parameter Optimization to Molecular Comparison Problems.

[BibT_eX]

[DOI]

Proceedings of the 4th Pacific Symposium on Biocomputing, 1999

Engineering Support Vector Machine Kerneis That Recognize Translation Initialion Sites.

[BibT_eX]

Proceedings of the German Conference on Bioinformatics, 1999

Pathway analysis in metabolic databases via differetial metabolic display (DMD).

[BibT_eX]

Robert Küffner

Proceedings of the German Conference on Bioinformatics, 1999

1998

RigFit: A new approach to superimposing ligand molecules.

[BibT_eX]

[DOI]

Claus Hiller

J. Comput. Aided Mol. Des., 1998

Computing closely matching upper and lower bounds on textile nesting problems.

[BibT_eX]

[DOI]

Ralf Heckmann

Eur. J. Oper. Res., 1998

Random Generation of Embedded Graphs and an Extension to Dobrushin Uniqueness (Extended Abstract).

[BibT_eX]

[DOI]

Proceedings of the Thirtieth Annual ACM Symposium on the Theory of Computing, 1998

1997

Multiple automatic base selection: Protein-ligand docking based on incremental construction without manual intervention.

[BibT_eX]

[DOI]

Bernd Kramer

J. Comput. Aided Mol. Des., 1997

Time-efficient flexible superposition of medium-sized molecules.

[BibT_eX]

[DOI]

J. Comput. Aided Mol. Des., 1997

Fast and numerically stable parametric alignment of biosequences.

[BibT_eX]

[DOI]

Proceedings of the First Annual International Conference on Research in Computational Molecular Biology, 1997

'Go with the winners' Generators with Applications to Molecular Modeling.

[BibT_eX]

[DOI]

Proceedings of the Randomization and Approximation Techniques in Computer Science, 1997

Detection of Distant Structural Similarities in a Set of Proteins Using a Fast Graph-Based Method.

[BibT_eX]

[DOI]

Ina Koch

Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, 1997

Parallel 'Go with the Winners' Algorithms in the LogP Model.

[BibT_eX]

[DOI]

Proceedings of the 11th International Parallel Processing Symposium (IPPS '97), 1997

DFG-Schwerpunkt: Informatikmethoden zur Analyse und Interpretation großer genomischer Datenmengen.

[BibT_eX]

[DOI]

Proceedings of the Informatik '97, 1997

Algorithmen zum automatischen Zeichnen von Graphen im Rahmen des DFG-Schwerpunkts Effiziente Algorithmen für diskrete Probleme und ihre Anwendungen.

[BibT_eX]

[DOI]

Franz-Josef Brandenburg

Michael Jünger

Petra Mutzel

Proceedings of the Informatik '97, 1997

1996

An Algorithm for Finding Maximal Common Subtopologies in a Set of Protein Structures.

[BibT_eX]

[DOI]

Ina Koch

J. Comput. Biol., 1996

Placement of medium-sized molecular fragments into active sites of proteins.

[BibT_eX]

[DOI]

Stephan Wefing

J. Comput. Aided Mol. Des., 1996

Editorial: Informatik in den Biowissenschaften.

[BibT_eX]

[DOI]

Ralf Hofestädt

Markus Löffler

Informationstechnik Tech. Inform., 1996

Time-Efficient Flexible Superposition of Medium-Sized Molecules and Molecular Fragments.

[BibT_eX]

Proceedings of the German Conference on Bioinformatics, 1996

Computing Upper and Lower Bounds on Textile Nesting Problems.

[BibT_eX]

[DOI]

Ralf Heckmann

Proceedings of the Algorithms, 1996

1995

The nesting problem in the leather manufacturing industry.

[BibT_eX]

[DOI]

Jörg Heistermann

Ann. Oper. Res., 1995

A simulated annealing approach to the nesting problem in the textile manufacturing industry.

[BibT_eX]

[DOI]

Ralf Heckmann

Ann. Oper. Res., 1995

Recursive Dynamic Programming for Adaptive Sequence and Structure Alignment.

[BibT_eX]

[DOI]

Ralf Thiele

Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995

Time-Efficient Docking of Flexible Ligands into Active Sites of Proteins.

[BibT_eX]

[DOI]

Bernd Kramer

Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995

APPlaUSE: Area and performance optimization in a unified placement and synthesis environment.

[BibT_eX]

[DOI]

Elof Frank

Proceedings of the 1995 IEEE/ACM International Conference on Computer-Aided Design, 1995

EMC-driven midway routing on PCBs.

[BibT_eX]

[DOI]

Proceedings of the 1995 European Design and Test Conference, 1995

1994

Robust methods for EMC-driven routing.

[BibT_eX]

[DOI]

IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 1994

1993

Robust and accurate hierarchical floorplanning with integrated global wiring.

[BibT_eX]

[DOI]

IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 1993

1. Fachtagung "Informatik in den Biowissenschaften".

[BibT_eX]

Ralf Hofestädt

Fritz Krückeberg

Künstliche Intell., 1993

Efficient Decision Procedures for Graph Properties on Centext-Free Graph Languages.

[BibT_eX]

[DOI]

J. ACM, 1993

Efficient Automatic Part Nesting on Irregular and Inhomogeneous Surfaces.

[BibT_eX]

[DOI]

Jörg Heistermann

Proceedings of the Fourth Annual ACM/SIGACT-SIAM Symposium on Discrete Algorithms, 1993

Algorithmic Research Problems in Molecular Bioinformatics.

[BibT_eX]

[DOI]

Proceedings of the Second Israel Symposium on Theory of Computing Systems, 1993

Informatik in den Naturwissenschaften.

[BibT_eX]

Proceedings of the Informatik: Grundlagen - Amwendungen, 1993

Informatik in den technischen Disziplinen.

[BibT_eX]

Proceedings of the Informatik: Grundlagen - Amwendungen, 1993

Integer Program formulations of Global Routing and Placement Problems.

[BibT_eX]

[DOI]

Martin Lügering

Proceedings of the Algorithmic Aspects of VLSI Layout, 1993

1992

The Correlation between the Complexities of the Nonhierarchical and Hierarchical Versions of Graph Problems.

[BibT_eX]

[DOI]

Klaus W. Wagner

J. Comput. Syst. Sci., 1992

HERO: hierarchical EMC-constrained routing.

[BibT_eX]

[DOI]

Proceedings of the 1992 IEEE/ACM International Conference on Computer-Aided Design, 1992

Processing of Hierarchically Defined Graphs and Graph Families.

[BibT_eX]

[DOI]

Franz Höfting

Proceedings of the Data Structures and Efficient Algorithms, 1992

1991

The efficient solution of integer programs for hierarchical global routing.

[BibT_eX]

[DOI]

Jörg Heistermann

IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 1991

Unstructured Path Problems and the Making of Semirings (Preliminary Version).

[BibT_eX]

[DOI]

Dirk Theune

Proceedings of the Algorithms and Data Structures, 1991

Efficient Algorithms for Path Problems with Gernal Cost Citeria.

[BibT_eX]

[DOI]

Dirk Theune

Proceedings of the Automata, Languages and Programming, 18th International Colloquium, 1991

Synthesis of multi-level logic with one symbolic input.

[BibT_eX]

[DOI]

Frank Buijs

Proceedings of the conference on European design automation, 1991

1990

The Binary Network Flow Problem is Logspace Complete for P.

[BibT_eX]

[DOI]

Klaus W. Wagner

Theor. Comput. Sci., 1990

A Robust Framework for Hierarchical Floorplanning with Integrated Global Wiring.

[BibT_eX]

[DOI]

Proceedings of the IEEE/ACM International Conference on Computer-Aided Design, 1990

VLSI Theory.

[BibT_eX]

Proceedings of the Handbook of Theoretical Computer Science, 1990

Combinatorial algorithms for integrated circuit layout.

[BibT_eX]

Applicable theory in computer science, Teubner, ISBN: 978-0-471-92838-6, 1990

1989

Hierarchical planarity testing algorithms.

[BibT_eX]

[DOI]

J. ACM, 1989

1988

Efficient Solution of Connectivity Problems on Hierarchically Defined Graphs.

[BibT_eX]

[DOI]

SIAM J. Comput., 1988

Linear arrangement problems on recursively partitioned graphs.

[BibT_eX]

[DOI]

ZOR Methods Model. Oper. Res., 1988

Efficient processing of hierarchical graphs for engineering design.

[BibT_eX]

Bull. EATCS, 1988

Efficient Analysis of Graph Properties on Context-free Graph Languages (Extended Abstract).

[BibT_eX]

[DOI]

Proceedings of the Automata, Languages and Programming, 15th International Colloquium, 1988

1987

Algorithmic Aspects of One-Dimensional Layout Compaction.

[BibT_eX]

[DOI]

Jürgen Doenhardt

IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 1987

Efficient Algorithms for Finding Minimum Spanning Forests of Hierarchically Defined Graphs.

[BibT_eX]

[DOI]

J. Algorithms, 1987

Efficient solutions of hierarchical systems of linear equations.

[BibT_eX]

[DOI]

Christian Wieners

Computing, 1987

1986

An analysis of ternary simulation as a tool for race detection in digital MOS circuits.

[BibT_eX]

[DOI]

Stefan Näher

Integr., 1986

Hierarchical Planary Testing Algorithms.

[BibT_eX]

[DOI]

Proceedings of the Automata, Languages and Programming, 13th International Colloquium, 1986

Hierarchische Darstellung geometrischer Objekte und ihre algorithmische Bedeutung.

[BibT_eX]

[DOI]

Proceedings of the GI - 16. Jahrestagung I, Berlin, 6.-10. Oktober 1986, Proceedings, 1986

Linear Algorithms For Two CMOS Layout Problems.

[BibT_eX]

[DOI]

Proceedings of the VLSI Algorithms and Architectures, 1986

Exploiting Hierarchy in VLSI Design.

[BibT_eX]

[DOI]

Proceedings of the VLSI Algorithms and Architectures, 1986

1984

On the Solution of Inequality Systems Relevant to IC-Layout.

[BibT_eX]

[DOI]

J. Algorithms, 1984

Algorithmische Spezifikation von symbolischen Layouts integrierter Schaltkreise.

[BibT_eX]

[DOI]

Proceedings of the Fachgespräche auf der 14. GI-Jahrestagung, 1984

1983

Efficient Algorithms for the Constraint Generation for Integrated Circuit Layout Compaction.

[BibT_eX]

Proceedings of the WG '83, 1983

1982

Asymptotically tight bounds on time-space trade-offs in a pebble game.

[BibT_eX]

[DOI]

J. ACM, 1982

Cube-Connected Cycles - Shuffle Exchange Graph - Das aktuelle Schlagwort.

[BibT_eX]

Inform. Spektrum, 1982

The Complexity of Compacting Hierarchically Specified Layouts of Integrated Circuits (Preliminary Version)

[BibT_eX]

[DOI]

Proceedings of the 23rd Annual Symposium on Foundations of Computer Science, 1982

1981

Black-White Pebbles and Graph Separation.

[BibT_eX]

[DOI]

Acta Informatica, 1981

1980

The Pebbling Problem is Complete in Polynomial Space.

[BibT_eX]

[DOI]

John R. Gilbert

SIAM J. Comput., 1980

The Space Complexity of Pebble Games on Trees.

[BibT_eX]

[DOI]

Inf. Process. Lett., 1980

1979

Upper and lower bounds on time-space tradeoffs in a pebble game.

[BibT_eX]

[DOI]

PhD thesis, 1979

A Fast Algorithm for Finding Dominators in a Flowgraph.

[BibT_eX]

[DOI]

ACM Trans. Program. Lang. Syst., 1979

Upper and Lower Bounds on Time-Space Tradeoffs

[BibT_eX]

[DOI]