Thomas E. Nichols

Orcid: 0000-0002-4516-5103

According to our database1, Thomas E. Nichols authored at least 110 papers between 1999 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
Decentralized Mixed Effects Modeling in COINSTAC.
Neuroinformatics, April, 2024

Evaluating brain group structure methods using hierarchical dynamic models.
Pattern Recognit., 2024

A framework for longitudinal latent factor modelling of treatment response in clinical trials with applications to Psoriatic Arthritis and Rheumatoid Arthritis.
J. Biomed. Informatics, 2024

2023
Cardiovascular and metabolic health is associated with functional brain connectivity in middle-aged and older adults: Results from the Human Connectome Project-Aging study.
NeuroImage, August, 2023

Association between brain similarity to severe mental illnesses and comorbid cerebral, physical, and cognitive impairments.
NeuroImage, 2023

Multi-task Cooperative Learning via Searching for Flat Minima.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 Workshops, 2023

2022
Causal inference on neuroimaging data with Mendelian randomisation.
NeuroImage, 2022

BLMM: Parallelised computing for big linear mixed models.
NeuroImage, 2022

Cerebral blood flow and cardiovascular risk effects on resting brain regional homogeneity.
NeuroImage, 2022

Application of a convolutional neural network to the quality control of MRI defacing.
Comput. Biol. Medicine, 2022

2021
Fisher Scoring for crossed factor linear mixed models.
Stat. Comput., 2021

Voxel-wise and spatial modelling of binary lesion masks: Comparison of methods with a realistic simulation framework.
NeuroImage, 2021

Comparing empirical kinship derived heritability for imaging genetics traits in the UK biobank and human connectome project.
NeuroImage, 2021

Meaningful associations in the adolescent brain cognitive development study.
NeuroImage, 2021

Confidence Sets for Cohen's <i>d</i> effect size images.
NeuroImage, 2021

Confound modelling in UK Biobank brain imaging.
NeuroImage, 2021

2020
Permutation inference for canonical correlation analysis.
NeuroImage, 2020

Multi-subject Stochastic Blockmodels for adaptive analysis of individual differences in human brain network cluster structure.
NeuroImage, 2020

Quantifying uncertainty in brain-predicted age using scalar-on-image quantile regression.
NeuroImage, 2020

Selective peak inference: Unbiased estimation of raw and standardized effect size at local maxima.
NeuroImage, 2020

Multiple testing correction over contrasts for brain imaging.
NeuroImage, 2020

2019
Modelling the distribution of white matter hyperintensities due to ageing on MRI images using Bayesian inference.
NeuroImage, 2019

Probabilistic TFCE: A generalized combination of cluster size and voxel intensity to increase statistical power.
NeuroImage, 2019

Estimation of brain age delta from brain imaging.
NeuroImage, 2019

Spatial confidence sets for raw effect size images.
NeuroImage, 2019

Effective degrees of freedom of the Pearson's correlation coefficient under autocorrelation.
NeuroImage, 2019

Towards algorithmic analytics for large-scale datasets.
Nat. Mach. Intell., 2019

Homogenizing Estimates of Heritability Among SOLAR-Eclipse, OpenMx, APACE, and FPHI Software Packages in Neuroimaging Data.
Frontiers Neuroinformatics, 2019

2018
The Lifespan Human Connectome Project in Development: A large-scale study of brain connectivity development in 5-21 year olds.
NeuroImage, 2018

Directed functional connectivity using dynamic graphical models.
NeuroImage, 2018

Insight and inference for DVARS.
NeuroImage, 2018

Heritability estimates on resting state fMRI data using the ENIGMA analysis pipeline.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

2017
Generalized reduced rank latent factor regression for high dimensional tensor fields, and neuroimaging-genetic applications.
NeuroImage, 2017

Improving data availability for brain image biobanking in healthy subjects: Practice-based suggestions from an international multidisciplinary working group.
NeuroImage, 2017

Accelerating permutation testing in voxel-wise analysis through subspace tracking: A new plugin for SnPM.
NeuroImage, 2017

Variance decomposition for single-subject task-based fMRI activity estimates across many sessions.
NeuroImage, 2017

2016
Faster permutation inference in brain imaging.
NeuroImage, 2016

Multi-modal characterization of rapid anterior hippocampal volume increase associated with aerobic exercise.
NeuroImage, 2016

The common genetic influence over processing speed and white matter microstructure: Evidence from the Old Order Amish and Human Connectome Projects.
NeuroImage, 2016

NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain.
NeuroImage, 2016

Behavior, sensitivity, and power of activation likelihood estimation characterized by massive empirical simulation.
NeuroImage, 2016

Sharing the wealth: Neuroimaging data repositories.
NeuroImage, 2016

Exploring fMRI Results Space: 31 Variants of an fMRI Analysis in AFNI, FSL, and SPM.
Frontiers Neuroinformatics, 2016

2015
A Bayesian Model of Category-Specific Emotional Brain Responses.
PLoS Comput. Biol., 2015

Multi-level block permutation.
NeuroImage, 2015

Age differences in the brain mechanisms of good taste.
NeuroImage, 2015

A voxelation-corrected non-stationary 3D cluster-size test based on random field theory.
NeuroImage, 2015

Heritability of fractional anisotropy in human white matter: A comparison of Human Connectome Project and ENIGMA-DTI data.
NeuroImage, 2015

FVGWAS: Fast voxelwise genome wide association analysis of large-scale imaging genetic data.
NeuroImage, 2015

A kernel machine method for detecting effects of interaction between multidimensional variable sets: An imaging genetics application.
NeuroImage, 2015

Fast and powerful heritability inference for family-based neuroimaging studies.
NeuroImage, 2015

Toward a Multisubject Analysis of Neural Connectivity.
Neural Comput., 2015

NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain.
Frontiers Neuroinformatics, 2015

Medial demons registration localizes the degree of genetic influence over subcortical shape variability: An N= 1480 meta-analysis.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

Empirically investigating the statistical validity of SPM, FSL and AFNI for single subject fMRI analysis.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

2014
Permutation inference for the general linear model.
NeuroImage, 2014

Imaging proteomics for diagnosis, monitoring and prediction of Alzheimer's disease.
NeuroImage, 2014

Multi-site study of additive genetic effects on fractional anisotropy of cerebral white matter: Comparing meta and megaanalytical approaches for data pooling.
NeuroImage, 2014

Corrigendum to "Multi-site genetic analysis of diffusion images and voxelwise heritability analysis: A pilot project of the ENIGMA-DTI working group" [NeuroImage 81 (2013) 455-469].
NeuroImage, 2014

Fast and accurate modelling of longitudinal and repeated measures neuroimaging data.
NeuroImage, 2014

Post-hoc power estimation for topological inference in fMRI.
NeuroImage, 2014

On study design in neuroimaging heritability analyses.
Proceedings of the Medical Imaging 2014: Image Processing, 2014

Spatial Modeling of Multiple Sclerosis for Disease Subtype Prediction.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014


2013
Genetics of the connectome.
NeuroImage, 2013

Transcriptomics of cortical gray matter thickness decline during normal aging.
NeuroImage, 2013

Multi-site genetic analysis of diffusion images and voxelwise heritability analysis: A pilot project of the ENIGMA-DTI working group.
NeuroImage, 2013

Power Estimates for Voxel-Based Genetic Association Studies Using Diffusion Imaging.
Proceedings of the Computational Diffusion MRI and Brain Connectivity, 2013

2012
Measuring and comparing brain cortical surface area and other areal quantities.
NeuroImage, 2012

The danger of systematic bias in group-level FMRI-lag-based causality estimation.
NeuroImage, 2012

Multiple testing corrections, nonparametric methods, and random field theory.
NeuroImage, 2012

Increasing power for voxel-wise genome-wide association studies: The random field theory, least square kernel machines and fast permutation procedures.
NeuroImage, 2012

Multivariate pattern classification of gray matter pathology in multiple sclerosis.
NeuroImage, 2012

2011
Using Gaussian-Process Regression for Meta-Analytic Neuroimaging Inference Based on Sparse Observations.
IEEE Trans. Medical Imaging, 2011

Network modelling methods for FMRI.
NeuroImage, 2011

False positives in neuroimaging genetics using voxel-based morphometry data.
NeuroImage, 2011

Adjusting the effect of nonstationarity in cluster-based and TFCE inference.
NeuroImage, 2011

2010
Discovering genetic associations with high-dimensional neuroimaging phenotypes: A sparse reduced-rank regression approach.
NeuroImage, 2010

Pathway-based approaches to imaging genetics association studies: Wnt signaling, GSK3beta substrates and major depression.
NeuroImage, 2010

2009
Cluster mass inference via random field theory.
NeuroImage, 2009

Evaluating the consistency and specificity of neuroimaging data using meta-analysis.
NeuroImage, 2009

Special Issue on Mathematics in Brain Imaging.
NeuroImage, 2009

Threshold-free cluster enhancement: Addressing problems of smoothing, threshold dependence and localisation in cluster inference.
NeuroImage, 2009

A novel ANCOVA design for analysis of MEG data with application to a visual attention study.
NeuroImage, 2009

Simple group fMRI modeling and inference.
NeuroImage, 2009

Meta-analysis of neuroimaging data: A comparison of image-based and coordinate-based pooling of studies.
NeuroImage, 2009

Anatomically-distinct genetic associations of APOE ɛ4 allele load with regional cortical atrophy in Alzheimer's disease.
NeuroImage, 2009

Association of regional gray matter volume loss and progression of white matter lesions in multiple sclerosis - A longitudinal voxel-based morphometry study.
NeuroImage, 2009

Adjusting the Neuroimaging Statistical Inferences for Nonstationarity.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

2008
Guidelines for reporting an fMRI study.
NeuroImage, 2008

Power calculation for group fMRI studies accounting for arbitrary design and temporal autocorrelation.
NeuroImage, 2008

2007
Rank-order versus mean based statistics for neuroimaging.
NeuroImage, 2007

Exploring Human Visual Attention in an Meg Study of a Spatial Cueing Paradigm Using a Novel Ancova Design.
Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007

2006
Tract-based spatial statistics: Voxelwise analysis of multi-subject diffusion data.
NeuroImage, 2006

Estimation efficiency and statistical power in arterial spin labeling fMRI.
NeuroImage, 2006

Non-white noise in fMRI: Does modelling have an impact?
NeuroImage, 2006

2005
A comparison of random field theory and permutation methods for the statistical analysis of MEG data.
NeuroImage, 2005

Valid conjunction inference with the minimum statistic.
NeuroImage, 2005

Imaging of oscillatory behavior in event-related MEG studies.
Proceedings of the Computational Imaging III, San Jose, 2005

2004
Nonstationary cluster-size inference with random field and permutation methods.
NeuroImage, 2004

Combining voxel intensity and cluster extent with permutation test framework.
NeuroImage, 2004

Statistical Surface-Based Morphometry Using a Non-Parametric Approach.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Covariance of Kinetic Parameter Estimators Based on Time Activity Curve Reconstructions: Preliminary Study on 1D Dynamic Imaging.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

2003
Optimization of experimental design in fMRI: a general framework using a genetic algorithm.
NeuroImage, 2003

Diagnosis and exploration of massively univariate neuroimaging models.
NeuroImage, 2003

Validating cluster size inference: random field and permutation methods.
NeuroImage, 2003

Spatiotemporal Localization of Significant Activation in MEG Using Permutation Tests.
Proceedings of the Information Processing in Medical Imaging, 2003

2002
Spatiotemporal reconstruction of list mode PET data.
IEEE Trans. Medical Imaging, 2002

Thresholding of Statistical Maps in Functional Neuroimaging Using the False Discovery Rate.
NeuroImage, 2002

1999
Continuous Time Dynamic PET Imaging Using List Mode Data.
Proceedings of the Information Processing in Medical Imaging, 1999


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