Thomas E. Gorochowski

According to our database, Thomas E. Gorochowski authored at least 21 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024.

Martin Golebiewski, Gary D. Bader, Padraig Gleeson, Thomas E. Gorochowski, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber

J. Integr. Bioinform., 2024

2023

Ten simple rules for managing laboratory information.

Casey-Tyler Berezin, Luis U. Aguilera, Sonja Billerbeck, Philip E. Bourne, Douglas Densmore, Paul S. Freemont, Thomas E. Gorochowski, Sarah I. Hernandez, Nathan J. Hillson, Connor R. King, Michael Köpke, Shuyi Ma, Katie M. Miller, Tae Seok Moon, Jason H. Moore, Brian Munsky, Chris J. Myers, Dequina A. Nicholas, Samuel J. Peccoud, Wen Zhou, Jean Peccoud

PLoS Comput. Biol., December, 2023

Effective design and inference for cell sorting and sequencing based massively parallel reporter assays.

Pierre-Aurélien Gilliot, Thomas E. Gorochowski

Bioinform., May, 2023

Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022.

Matthias König, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath, Falk Schreiber

J. Integr. Bioinform., March, 2023

Synthetic biology open language (SBOL) version 3.1.0.

Lukas Buecherl, Thomas Mitchell, James Scott-Brown, Prashant Vaidyanathan, Gonzalo Vidal, Hasan Baig, Bryan Bartley, Jacob Beal, Matthew Crowther, Pedro Fontanarrosa, Thomas E. Gorochowski, Raik Grünberg, Vishwesh Kulkarni, James Alastair McLaughlin, Göksel Misirli, Ernst Oberortner, Anil Wipat, Chris J. Myers

J. Integr. Bioinform., March, 2023

Bridging the gap between mechanistic biological models and machine learning surrogates.

Ioana M. Gherman, Zahraa S. Abdallah, Wei Pang, Thomas E. Gorochowski, Claire S. Grierson, Lucia Marucci

PLoS Comput. Biol., 2023

Constructor algorithms for building unconventional computers able to solve NP-complete problems.

Tony McCaffrey, Thomas E. Gorochowski, Lee Spector

CoRR, 2023

2022

Advanced medical micro-robotics for early diagnosis and therapeutic interventions.

Dandan Zhang, Thomas E. Gorochowski, Lucia Marucci, Hyun-Taek Lee, Bruno Gil, Bing Li, Sabine Hauert, Eric M. Yeatman

Frontiers Robotics AI, 2022

An Open Platform for High-Resolution Light-Based Control of Microscopic Collectives.

Ana Rubio Denniss, Thomas E. Gorochowski, Sabine Hauert

Adv. Intell. Syst., 2022

2021

Specifications of standards in systems and synthetic biology: status and developments in 2021.

Falk Schreiber, Padraig Gleeson, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath

J. Integr. Bioinform., 2021

Synthetic biology open language visual (SBOL visual) version 3.0.

Hasan Baig, Pedro Fontanarossa, James Alastair McLaughlin, James Scott-Brown, Prashant Vaidyanathan, Thomas E. Gorochowski, Goksel Misirli, Jacob Beal, Chris J. Myers

J. Integr. Bioinform., 2021

Synthetic biology open language visual (SBOL Visual) version 2.3.

Hasan Baig, Pedro Fontanarossa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Shyam Bhakta, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno, Thomas E. Gorochowski, Raik Grünberg, Jihwan Lee, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Logan Terry, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers

J. Integr. Bioinform., 2021

2020

Specifications of standards in systems and synthetic biology: status and developments in 2020.

Falk Schreiber, Björn Sommer, Tobias Czauderna, Martin Golebiewski, Thomas E. Gorochowski, Michael Hucka, Sarah M. Keating, Matthias König, Chris J. Myers, David P. Nickerson, Dagmar Waltemath

J. Integr. Bioinform., 2020

Synthetic biology open language (SBOL) version 3.0.0.

Hasan Baig, Pedro Fontanarrosa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Jacob Beal, Matthew Crowther, Thomas E. Gorochowski, Raik Grünberg, Goksel Misirli, James Scott-Brown, Ernst Oberortner, Anil Wipat, Chris J. Myers

J. Integr. Bioinform., 2020

Synthetic biology open language visual (SBOL visual) version 2.2.

Hasan Baig, Pedro Fontanarrosa, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Michael Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Marta Vazquez Vilar, Christopher A. Voigt, Anil Wipat, David Zong, Zach Zundel, Jacob Beal, Chris J. Myers

J. Integr. Bioinform., 2020

2019

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1.

Curtis Madsen, Ángel Goñi-Moreno, Zachary Palchick, Umesh P, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, James Alastair McLaughlin, Tramy Nguyen, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat

J. Integr. Bioinform., 2019

Synthetic Biology Open Language (SBOL) Version 2.3.

Curtis Madsen, Ángel Goñi-Moreno, Umesh P, Zachary Palchick, Nicholas Roehner, Christian Atallah, Bryan Bartley, Kiri Choi, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg, Chris Macklin, James Alastair McLaughlin, Xianwei Meng, Tramy Nguyen, Matthew R. Pocock, Meher Samineni, James Scott-Brown, Ysis Tarter, Michael Zhang, Zhen Zhang, Zach Zundel, Jacob Beal, Michael Bissell, Kevin Clancy, John H. Gennari, Goksel Misirli, Chris J. Myers, Ernst Oberortner, Herbert M. Sauro, Anil Wipat

J. Integr. Bioinform., 2019

2018

Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0.

Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Thomas E. Gorochowski, Raik Grünberg, Augustin Luna, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat

J. Integr. Bioinform., 2018

2012

Using Aging to Visually Uncover Evolutionary Processes on Networks.

Thomas E. Gorochowski, Mario di Bernardo, Claire S. Grierson

IEEE Trans. Vis. Comput. Graph., 2012

Evolving dynamical networks: A formalism for describing complex systems.

Thomas E. Gorochowski, Mario di Bernardo, Claire S. Grierson

Complex., 2012

2009

NetEvo: A computational framework for the evolution of dynamical complex networks

Thomas E. Gorochowski, Mario di Bernardo, Claire S. Grierson

CoRR, 2009