Thomas Abeel

According to our database, Thomas Abeel authored at least 29 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

The Growing Strawberries Dataset: Tracking Multiple Objects with Biological Development over an Extended Period.

Junhan Wen, Camiel R. Verschoor, Chengming Feng, Irina-Mona Epure, Thomas Abeel, Mathijs de Weerdt

Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2024

2023

Pan-genome de Bruijn graph using the bidirectional FM-index.

Lore Depuydt, Luca Renders, Thomas Abeel, Jan Fostier

BMC Bioinform., December, 2023

SHIP: identifying antimicrobial resistance gene transfer between plasmids.

Marco Teixeira, Stephanie Pillay, Aysun Urhan, Thomas Abeel

Bioinform., October, 2023

2022

HAT: haplotype assembly tool using short and error-prone long reads.

Ramin Shirali Hossein Zade, Aysun Urhan, Alvaro Assis de Souza, Akash Singh, Thomas Abeel

Bioinform., December, 2022

2020

An educational guide for nanopore sequencing in the classroom.

Alex Salazar, Franklin L. Nobrega, Christine Anyansi, Cristian Aparicio-Maldonado, Ana Rita Costa, Anna C. Haagsma, Anwar Hiralal, Ahmed Mahfouz, Rebecca E. McKenzie, Teunke van Rossum, Stan J. J. Brouns, Thomas Abeel

PLoS Comput. Biol., 2020

2018

Approximate, simultaneous comparison of microbial genome architectures via syntenic anchoring of quiver representations.

Alex Salazar, Thomas Abeel

Bioinform., 2018

2015

Normalizing alternate representations of large sequence variants across multiple bacterial genomes.

Alex Salazar, Ashlee Earl, Christopher Desjardins, Thomas Abeel

BMC Bioinform., 2015

2014

Soft Skills: An Important Asset Acquired from Organizing Regional Student Group Activities.

Jeroen de Ridder, Pieter Meysman, Olugbenga Oluseun Oluwagbemi, Thomas Abeel

PLoS Comput. Biol., 2014

The Upside of Failure: How Regional Student Groups Learn from Their Mistakes.

Tarun Mishra, R. Gonzalo Parra, Thomas Abeel

PLoS Comput. Biol., 2014

2013

The Spirit of Competition: To Win or Not To Win.

Teresa Szczepinska, Wataru Iwasaki, Thomas Abeel

PLoS Comput. Biol., 2013

Ten Simple Rules for Starting a Regional Student Group.

Avinash Kumar Shanmugam, Geoff MacIntyre, Magali Michaut, Thomas Abeel

PLoS Comput. Biol., 2013

Don't Wear Your New Shoes (Yet): Taking the Right Steps to Become a Successful Principal Investigator.

Jeroen de Ridder, Thomas Abeel, Magali Michaut, Venkata P. Satagopam, Nils Gehlenborg

PLoS Comput. Biol., 2013

The Regional Student Group Program of the ISCB Student Council: Stories from the Road.

Geoff MacIntyre, Magali Michaut, Thomas Abeel

PLoS Comput. Biol., 2013

ISCB Computational Biology Wikipedia Competition.

Alex Bateman, Janet Kelso, Daniel Mietchen, Geoff MacIntyre, Tomás Di Domenico, Thomas Abeel, Darren W. Logan, Predrag Radivojac, Burkhard Rost

PLoS Comput. Biol., 2013

The <i>Mycobacterium tuberculosis</i> regulatory network and hypoxia.

James E. Galagan, Kyle J. Minch, Matthew Peterson, Anna Lyubetskaya, Elham Azizi, Linsday Sweet, Antonio Gomes, Tige R. Rustad, Gregory Dolganov, Irina Glotova, Thomas Abeel, Chris Mahwinney, Adam D. Kennedy, René Allard, William Brabant, Andrew Krueger, Suma Jaini, Brent Honda, Wen-Han Yu, Mark J. Hickey, Jeremy Zucker, Christopher Garay, Brian Weiner, Peter Sisk, Christian Stolte, Jessica K. Winkler, Yves Van de Peer, Paul Iazzetti, Diogo Camacho, Jonathan M. Dreyfuss, Yang Liu, Anca Dorhoi, Hans-Joachim Mollenkopf, Paul Drogaris, Julie Lamontagne, Yiyong Zhou, Julie Piquenot, Sang Tae Park, Sahadevan Raman, Stefan H. E. Kaufmann, Robert P. Mohney, Daniel Chelsky, D. Branch Moody, David R. Sherman, Gary K. Schoolnik

Nat., 2013

2012

Semantically linking molecular entities in literature through entity relationships.

Sofie Van Landeghem, Jari Björne, Thomas Abeel, Bernard De Baets, Tapio Salakoski, Yves Van de Peer

BMC Bioinform., 2012

Highlights from the Eighth International Society for Computational Biology (ISCB) Student Council Symposium 2012.

Alexander Goncearenco, Priscila Grynberg, Olga B. Botvinnik, Geoff MacIntyre, Thomas Abeel

BMC Bioinform., 2012

2011

Highlights from the Student Council Symposium 2011 at the International Conference on Intelligent Systems for Molecular Biology and European Conference on Computational Biology.

Priscila Grynberg, Thomas Abeel, Pedro Lopes, Geoff MacIntyre, Lorena Pantano Rubiño

BMC Bioinform., 2011

Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction.

Sofie Van Landeghem, Thomas Abeel, Bernard De Baets, Yves Van de Peer

Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

2010

Highlights from the 6th International Society for Computational Biology Student Council Symposium at the 18th Annual International Conference on Intelligent Systems for Molecular Biology.

Christiaan Klijn, Magali Michaut, Thomas Abeel

BMC Bioinform., 2010

Highlights of the BioTM 2010 workshop on advances in bio text mining.

Thomas Abeel, Sofie Van Landeghem, Roser Morante, Vincent Van Asch, Yves Van de Peer, Walter Daelemans, Yvan Saeys

BMC Bioinform., 2010

Discriminative and informative features for biomolecular text mining with ensemble feature selection.

Sofie Van Landeghem, Thomas Abeel, Yvan Saeys, Yves Van de Peer

Bioinform., 2010

Robust biomarker identification for cancer diagnosis with ensemble feature selection methods.

Thomas Abeel, Thibault Helleputte, Yves Van de Peer, Pierre Dupont, Yvan Saeys

Bioinform., 2010

2009

Java-ML: A Machine Learning Library.

Thomas Abeel, Yves Van de Peer, Yvan Saeys

J. Mach. Learn. Res., 2009

Highlights from the 5^thInternational Society for Computational Biology Student Council Symposium at the 17^thAnnual International Conference on Intelligent Systems for Molecular Biology and the 8^thEuropean Conference on Computational Biology.

Thomas Abeel, Jeroen de Ridder, Lucia Peixoto

BMC Bioinform., 2009

Toward a gold standard for promoter prediction evaluation.

Thomas Abeel, Yves Van de Peer, Yvan Saeys

Bioinform., 2009

2008

Robust Feature Selection Using Ensemble Feature Selection Techniques.

Yvan Saeys, Thomas Abeel, Yves Van de Peer

Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2008

ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles.

Thomas Abeel, Yvan Saeys, Pierre Rouzé, Yves Van de Peer

Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

2007

Translation initiation site prediction on a genomic scale: beauty in simplicity.

Yvan Saeys, Thomas Abeel, Sven Degroeve, Yves Van de Peer

Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007