Tetsuya Sakurai

Orcid: 0000-0002-5789-7547

According to our database1, Tetsuya Sakurai authored at least 148 papers between 1991 and 2024.

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Bibliography

2024
Moreau-Yoshida variational transport: a general framework for solving regularized distributional optimization problems.
Mach. Learn., September, 2024

FIAMol-AB: A feature fusion and attention-based deep learning method for enhanced antibiotic discovery.
Comput. Biol. Medicine, January, 2024

An interpretable deep learning model predicts RNA-small molecule binding sites.
Future Gener. Comput. Syst., 2024

Collaborative causal inference on distributed data.
Expert Syst. Appl., 2024

FedDCL: a federated data collaboration learning as a hybrid-type privacy-preserving framework based on federated learning and data collaboration.
CoRR, 2024

MoFormer: Multi-objective Antimicrobial Peptide Generation Based on Conditional Transformer Joint Multi-modal Fusion Descriptor.
CoRR, 2024

Estimation of conditional average treatment effects on distributed data: A privacy-preserving approach.
CoRR, 2024

Multi-party collaborative drug discovery via federated learning.
Comput. Biol. Medicine, 2024

Toward the Application of Differential Privacy to Data Collaboration.
IEEE Access, 2024

CyclePermea: Membrane Permeability Prediction of Cyclic Peptides with a Multi-Loss Fusion Network.
Proceedings of the International Joint Conference on Neural Networks, 2024

Deciphering the Complex Characterization of Coding LncRNA.
Proceedings of the International Joint Conference on Neural Networks, 2024

2023
Deep generative model for drug design from protein target sequence.
J. Cheminformatics, December, 2023

Complex moment-based eigensolver coupled with two Krylov subspaces.
J. Comput. Appl. Math., November, 2023

Top to random shuffles on colored permutations.
Discret. Appl. Math., November, 2023

Another use of SMOTE for interpretable data collaboration analysis.
Expert Syst. Appl., October, 2023

Adaptive learning embedding features to improve the predictive performance of SARS-CoV-2 phosphorylation sites.
Bioinform., October, 2023

DC-SHAP Method for Consistent Explainability in Privacy-Preserving Distributed Machine Learning.
Hum. Centric Intell. Syst., September, 2023

Multi-omics clustering for cancer subtyping based on latent subspace learning.
Comput. Biol. Medicine, September, 2023

DC-COX: Data collaboration Cox proportional hazards model for privacy-preserving survival analysis on multiple parties.
J. Biomed. Informatics, January, 2023

SiameseCPP: a sequence-based Siamese network to predict cell-penetrating peptides by contrastive learning.
Briefings Bioinform., January, 2023

Mirror variational transport: a particle-based algorithm for distributional optimization on constrained domains.
Mach. Learn., 2023

Non-readily identifiable data collaboration analysis for multiple datasets including personal information.
Inf. Fusion, 2023

LSEC: Large-scale spectral ensemble clustering.
Intell. Data Anal., 2023

Distortion-free PCA on sample space for highly variable gene detection from single-cell RNA-seq data.
Frontiers Comput. Sci., 2023

Wasserstein Gradient Flow over Variational Parameter Space for Variational Inference.
CoRR, 2023

Data Collaboration Analysis applied to Compound Datasets and the Introduction of Projection data to Non-IID settings.
CoRR, 2023

Common and Unique Features Learning in Multi-view Network Embedding.
Proceedings of the International Joint Conference on Neural Networks, 2023

Quantum Algorithm for Regularized Spectral Clustering.
Proceedings of the 15th International Conference on Machine Learning and Computing, 2023

Multi-view Network Embedding with Structure and Semantic Contrastive Learning.
Proceedings of the IEEE International Conference on Multimedia and Expo, 2023

Multi-omics clustering based on interpretable and discriminative features for cancer subtyping.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022
Flexible subspace iteration with moments for an effective contour integration-based eigensolver.
Numer. Linear Algebra Appl., 2022

The tropical scaling for the polynomial eigenvalue problem solved by a contour integral method.
Numer. Linear Algebra Appl., 2022

Sequential reinforcement active feature learning for gene signature identification in renal cell carcinoma.
J. Biomed. Informatics, 2022

Divide-and-conquer based large-scale spectral clustering.
Neurocomputing, 2022

A parallel computing method for the higher order tensor renormalization group.
Comput. Phys. Commun., 2022

Achieving Transparency in Distributed Machine Learning with Explainable Data Collaboration.
CoRR, 2022

A Particle-Based Algorithm for Distributional Optimization on \textit{Constrained Domains} via Variational Transport and Mirror Descent.
CoRR, 2022

ToxIBTL: prediction of peptide toxicity based on information bottleneck and transfer learning.
Bioinform., 2022

NerLTR-DTA: drug-target binding affinity prediction based on neighbor relationship and learning to rank.
Bioinform., 2022

iLoc-miRNA: extracellular/intracellular miRNA prediction using deep BiLSTM with attention mechanism.
Briefings Bioinform., 2022

Multiview network embedding for drug-target Interactions prediction by consistent and complementary information preserving.
Briefings Bioinform., 2022

Knowledge-Driven Program Synthesis via Adaptive Replacement Mutation and Auto-constructed Subprogram Archives.
Proceedings of the IEEE Symposium Series on Computational Intelligence, 2022

ToxinMI: improving peptide toxicity prediction by fusing multimodal information based on mutual information.
Proceedings of the Conference on Research in Adaptive and Convergent Systems, 2022

Knowledge distillation-based privacy-preserving data analysis.
Proceedings of the Conference on Research in Adaptive and Convergent Systems, 2022

Multi-View Federated Learning with Data Collaboration.
Proceedings of the ICMLC 2022: 14th International Conference on Machine Learning and Computing, Guangzhou, China, February 18, 2022

Incorporating sub-programs as knowledge in program synthesis by PushGP and adaptive replacement mutation.
Proceedings of the GECCO '22: Genetic and Evolutionary Computation Conference, Companion Volume, Boston, Massachusetts, USA, July 9, 2022

A study of the privacy perspective on principal component analysis via a realistic attack model.
Proceedings of the 18th International Conference on Computational Intelligence and Security, 2022

Using Agent-Based Simulator to Assess Interventions Against COVID-19 in a Small Community Generated from Map Data.
Proceedings of the 21st International Conference on Autonomous Agents and Multiagent Systems, 2022

2021
Decentralized Learning with Virtual Patients for Medical Diagnosis of Diabetes.
SN Comput. Sci., 2021

Interpretable collaborative data analysis on distributed data.
Expert Syst. Appl., 2021

Contour Integral-based Quantum Algorithm for Estimating Matrix Eigenvalue Density.
CoRR, 2021

Complex moment-based method with nonlinear transformation for computing large and sparse interior singular triplets.
CoRR, 2021

Accuracy and Privacy Evaluations of Collaborative Data Analysis.
CoRR, 2021

ATSE: a peptide toxicity predictor by exploiting structural and evolutionary information based on graph neural network and attention mechanism.
Briefings Bioinform., 2021

Application of learning to rank in bioinformatics tasks.
Briefings Bioinform., 2021

Spectral Clustering Joint Deep Embedding Learning by Autoencoder.
Proceedings of the International Joint Conference on Neural Networks, 2021

Online Spectral Classification for Long-Term Spike Sorting.
Proceedings of the ICMHI 2021: 5th International Conference on Medical and Health Informatics, 2021

Spectral Graph Partitioning Using Geodesic Distance-based Projection.
Proceedings of the 2021 IEEE High Performance Extreme Computing Conference, 2021

Efficient Implementation of a Dimensionality Reduction Method Using a Complex Moment-Based Subspace.
Proceedings of the HPC Asia 2021: The International Conference on High Performance Computing in Asia-Pacific Region, 2021

Efficient Contour Integral-based Eigenvalue Computation Using an Iterative Linear Solver with Shift-Invert Preconditioning.
Proceedings of the HPC Asia 2021: The International Conference on High Performance Computing in Asia-Pacific Region, 2021

Dynamic adaptation of decomposition vector set size for MOEA/D.
Proceedings of the GECCO '21: Genetic and Evolutionary Computation Conference, 2021

Collaborative Novelty Detection for Distributed Data by a Probabilistic Method.
Proceedings of the Asian Conference on Machine Learning, 2021

2020

An oversampling framework for imbalanced classification based on Laplacian eigenmaps.
Neurocomputing, 2020

Multiclass spectral feature scaling method for dimensionality reduction.
Intell. Data Anal., 2020

Federated Learning System without Model Sharing through Integration of Dimensional Reduced Data Representations.
CoRR, 2020

Adaptive Unsupervised Feature Learning for Gene Signature Identification in Non-Small-Cell Lung Cancer.
IEEE Access, 2020

Collaborative Data Analysis: Non-model Sharing-Type Machine Learning for Distributed Data.
Proceedings of the Knowledge Management and Acquisition for Intelligent Systems, 2020

Accelerating the Backpropagation Algorithm by Using NMF-Based Method on Deep Neural Networks.
Proceedings of the Knowledge Management and Acquisition for Intelligent Systems, 2020

Hubness-based Sampling Method for Nyström Spectral Clustering.
Proceedings of the 2020 International Joint Conference on Neural Networks, 2020

Ensemble Learning for Spectral Clustering.
Proceedings of the 20th IEEE International Conference on Data Mining, 2020

A Training Difficulty Schedule for Effective Search of Meta-Heuristic Design.
Proceedings of the IEEE Congress on Evolutionary Computation, 2020

Parameter Evolution Self-Adaptive Strategy and Its Application for Cuckoo Search.
Proceedings of the Bioinspired Optimization Methods and Their Applications, 2020

2019
Backward error analysis for linearizations in heavily damped quadratic eigenvalue problem.
Numer. Linear Algebra Appl., 2019

Data collaboration analysis for distributed datasets.
CoRR, 2019

Simultaneous band reduction of two symmetric matrices.
Comput. Math. Appl., 2019

Distributed Collaborative Feature Selection Based on Intermediate Representation.
Proceedings of the Twenty-Eighth International Joint Conference on Artificial Intelligence, 2019

Using diversity as a priority function for resource allocation on MOEA/D.
Proceedings of the Genetic and Evolutionary Computation Conference Companion, 2019

Complex Moment-Based Supervised Eigenmap for Dimensionality Reduction.
Proceedings of the Thirty-Third AAAI Conference on Artificial Intelligence, 2019

2018
Block SS-CAA: A complex moment-based parallel nonlinear eigensolver using the block communication-avoiding Arnoldi procedure.
Parallel Comput., 2018

Parallel Implementation of the Nonlinear Semi-NMF Based Alternating Optimization Method for Deep Neural Networks.
Neural Process. Lett., 2018

Unsupervised Feature Selection for Microarray Gene Expression Data Based on Discriminative Structure Learning.
J. Univers. Comput. Sci., 2018

Performance evaluation of the Sakurai-Sugiura method with a block Krylov subspace linear solver for large dense Hermitian-definite generalized eigenvalue problems.
JSIAM Lett., 2018

Cost-efficient cutoff method for tensor renormalization group with randomized singular value decomposition.
JSIAM Lett., 2018

Spectral clustering with adaptive similarity measure in Kernel space.
Intell. Data Anal., 2018

Classification of X-Ray Protein Crystallization Using Deep Convolutional Neural Networks with a Finder Module.
CoRR, 2018

Large Scale Spectral Clustering Using Sparse Representation Based on Hubness.
Proceedings of the 2018 IEEE SmartWorld, 2018

Experimental Analysis of the Tournament Size on Genetic Algorithms.
Proceedings of the IEEE International Conference on Systems, Man, and Cybernetics, 2018

Optimization of Reordering Procedures in HOTRG for Distributed Parallel Computing.
Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium Workshops, 2018

Spectral Feature Scaling Method for Supervised Dimensionality Reduction.
Proceedings of the Twenty-Seventh International Joint Conference on Artificial Intelligence, 2018

2017
Feature Selection via Embedded Learning Based on Tangent Space Alignment for Microarray Data.
J. Comput. Sci. Eng., December, 2017

Block Krylov-type complex moment-based eigensolvers for solving generalized eigenvalue problems.
Numer. Algorithms, 2017

Improving the numerical stability of the Sakurai-Sugiura method for quadratic eigenvalue problems.
JSIAM Lett., 2017

Efficient and scalable calculation of complex band structure using Sakurai-Sugiura method.
Proceedings of the International Conference for High Performance Computing, 2017

Structure-Preserving Technique in the Block SS-Hankel Method for Solving Hermitian Generalized Eigenvalue Problems.
Proceedings of the Parallel Processing and Applied Mathematics, 2017

Similarity Measure Based on Adaptive Neighbors for Spectral Clustering.
Proceedings of the 9th International Conference on Machine Learning and Computing, 2017

Unsupervised Feature Learning for Gene Selection in Microarray Data Analysis.
Proceedings of the 1st International Conference on Medical and Health Informatics, 2017

2016
Error bounds of Rayleigh-Ritz type contour integral-based eigensolver for solving generalized eigenvalue problems.
Numer. Algorithms, 2016

Recovering from accuracy deterioration in the contour integral-based eigensolver.
JSIAM Lett., 2016

Alternating Optimization Method Based on Nonnegative Matrix Factorizations for Deep Neural Networks.
Proceedings of the Neural Information Processing - 23rd International Conference, 2016

Global Discriminant Analysis for Unsupervised Feature Selection with Local Structure Preservation.
Proceedings of the Twenty-Ninth International Florida Artificial Intelligence Research Society Conference, 2016

Spectral clustering and discriminant analysis for unsupervised feature selection.
Proceedings of the 24th European Symposium on Artificial Neural Networks, 2016

2015
Improving the convergence behaviour of BiCGSTAB by applying <i>D</i>-norm minimization.
JSIAM Lett., 2015

Filter analysis for the stochastic estimation of eigenvalue counts.
JSIAM Lett., 2015

Spectral clustering using robust similarity measure based on closeness of shared Nearest Neighbors.
Proceedings of the 2015 International Joint Conference on Neural Networks, 2015

2014
ppdb: plant promoter database version 3.0.
Nucleic Acids Res., 2014

Block conjugate gradient type methods for the approximation of bilinear form C<sup>H</sup>A<sup>-1</sup>B.
Comput. Math. Appl., 2014

Correlations between predicted protein disorder and post-translational modifications in plants.
Bioinform., 2014

A block Arnoldi-type contour integral spectral projection method for solving generalized eigenvalue problems.
Appl. Math. Lett., 2014

2013
Performance comparison of parallel eigensolvers based on a contour integral method and a Lanczos method.
Parallel Comput., 2013

A projection method for nonlinear eigenvalue problems using contour integrals.
JSIAM Lett., 2013

Multi-GPU Scalable Implementation of a Contour-Integral-Based Eigensolver for Real Symmetric Dense Generalized Eigenvalue Problems.
Proceedings of the Eighth International Conference on P2P, 2013

2012
A modified Block IDR($s$) method for computing high accuracy solutions.
JSIAM Lett., 2012

A parameter optimization technique for a weighted Jacobi-type preconditioner.
JSIAM Lett., 2012

Modified block BiCGSTAB for lattice QCD.
Comput. Phys. Commun., 2012

Efficient Algorithm for Linear Systems Arising in Solutions of Eigenproblems and Its Application to Electronic-Structure Calculations.
Proceedings of the High Performance Computing for Computational Science, 2012

An Auto-Tuning Technique of the Weighted Jacobi-Type Iteration Used for Preconditioners of Krylov Subspace Methods.
Proceedings of the IEEE 6th International Symposium on Embedded Multicore/Manycore SoCs, 2012

2011
A convergence improvement of the BSAIC preconditioner by deflation.
JSIAM Lett., 2011

Stochastic estimation method of eigenvalue density for nonlinear eigenvalue problem on the complex plane.
JSIAM Lett., 2011

2010
A block sparse approximate inverse with cutoff preconditioner for semi-sparse linear systems derived from Molecular Orbital calculations.
JSIAM Lett., 2010

A quadrature-based eigensolver with a Krylov subspace method for shifted linear systems for Hermitian eigenproblems in lattice QCD.
JSIAM Lett., 2010

Parallel stochastic estimation method of eigenvalue distribution.
JSIAM Lett., 2010

Parallel Fock matrix construction with distributed shared memory model for the FMO-MO method.
J. Comput. Chem., 2010

A filter diagonalization for generalized eigenvalue problems based on the Sakurai-Sugiura projection method.
J. Comput. Appl. Math., 2010

Application of preconditioned block BiCGGR to the Wilson-Dirac equation with multiple right-hand sides in lattice QCD.
Comput. Phys. Commun., 2010

Application of block Krylov subspace algorithms to the Wilson-Dirac equation with multiple right-hand sides in lattice QCD.
Comput. Phys. Commun., 2010

LegumeTFDB: an integrative database of <i>Glycine max</i>, <i>Lotus japonicus</i> and <i>Medicago truncatula</i> transcription factors.
Bioinform., 2010

sORF finder: a program package to identify small open reading frames with high coding potential.
Bioinform., 2010

2009
Block BiCGGR: a new Block Krylov subspace method for computing high accuracy solutions.
JSIAM Lett., 2009

Error analysis for a matrix pencil of Hankel matrices with perturbed complex moments.
JSIAM Lett., 2009

A numerical method for nonlinear eigenvalue problems using contour integrals.
JSIAM Lett., 2009

A method for finding zeros of polynomial equations using a contour integral based eigensolver.
Proceedings of the Symbolic Numeric Computation, 2009

2008
PRIMe: A Web Site That Assembles Tools for Metabolomics and Transcriptomics.
Silico Biol., 2008

A parallel method for large sparse generalized eigenvalue problems using a GridRPC system.
Future Gener. Comput. Syst., 2008

A Secure Data Repository Integrating Huge Volumes of Digital Contents as a Semantic Web.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008

2007
Construction of a metadata space for a specific field of knowledge from an index of a document.
Syst. Comput. Jpn., 2007

On Single Precision Preconditioners for Krylov Subspace Iterative Methods.
Proceedings of the Large-Scale Scientific Computing, 6th International Conference, 2007

2006
A Master-Worker Type Eigensolver for Molecular Orbital Computations.
Proceedings of the Applied Parallel Computing. State of the Art in Scientific Computing, 2006

Performance Improvement by Data Management Layer in a Grid RPC System.
Proceedings of the Advances in Grid and Pervasive Computing, 2006

An Implementation Method of an Integrated Associative Search for Mathematical Expressions.
Proceedings of the IASTED International Conference on Databases and Applications, 2006

2005
RARGE: a large-scale database of RIKEN <i>Arabidopsis</i> resources ranging from transcriptome to phenome.
Nucleic Acids Res., 2005

A Hybrid Parallel Method for Large Sparse Eigenvalue Problems on a Grid Computing Environment Using Ninf-G/MPI.
Proceedings of the Large-Scale Scientific Computing, 5th International Conference, 2005

2004
A Parallel Method for Large Sparse Generalized Eigenvalue Problems by OmniRPC in a Grid Environment.
Proceedings of the Applied Parallel Computing, 2004

2003
Error Analysis of a Derivative-Free Algorithm for Computing Zeros of Holomorphic Functions.
Computing, 2003

2000
On Factorization of Analytic Functions and Its Verification.
Reliab. Comput., 2000

1996
A Methodology of Parsing Mathematical Notation for Mathematical Computation.
Proceedings of the 1996 International Symposium on Symbolic and Algebraic Computation, 1996

1992
Numerical factorization of a polynomial by rational Hermite interpolation.
Numer. Algorithms, 1992

1991
An iterative method for algebraic equation by Padé approximation.
Computing, 1991


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