Tetsuo Shibuya

J. Comb. Optim., May, 2024

String editing under pattern constraints.

[BibT_eX]

[DOI]

Theor. Comput. Sci., 2024

Differentially Private Selection using Smooth Sensitivity.

[BibT_eX]

[DOI]

CoRR, 2024

Cycle Counting under Local Differential Privacy for Degeneracy-bounded Graphs.

[BibT_eX]

[DOI]

Quentin Hillebrand

Vorapong Suppakitpaisarn

CoRR, 2024

Counting on Rainbow k-Connections.

[BibT_eX]

[DOI]

Proceedings of the Theory and Applications of Models of Computation, 2024

Recognition and Proper Coloring of Unit Segment Intersection Graphs.

[BibT_eX]

[DOI]

Proceedings of the 19th Scandinavian Symposium and Workshops on Algorithm Theory, 2024

Privacy-Optimized Randomized Response for Sharing Multi-Attribute Data.

[BibT_eX]

[DOI]

Proceedings of the IEEE Symposium on Computers and Communications, 2024

2023

Genetic algorithm-based feature selection with manifold learning for cancer classification using microarray data.

[BibT_eX]

[DOI]

BMC Bioinform., December, 2023

Privacy-Preserving Statistical Analysis of Genomic Data Using Compressive Mechanism with Haar Wavelet Transform.

[BibT_eX]

[DOI]

J. Comput. Biol., February, 2023

Communication Cost Reduction for Subgraph Counting under Local Differential Privacy via Hash Functions.

[BibT_eX]

[DOI]

Quentin Hillebrand

Vorapong Suppakitpaisarn

CoRR, 2023

Hardness of Bounding Influence via Graph Modification.

[BibT_eX]

[DOI]

Proceedings of the SOFSEM 2023: Theory and Practice of Computer Science, 2023

Privacy-Preserving Publication of GWAS Statistics using Smooth Sensitivity.

[BibT_eX]

[DOI]

Proceedings of the 20th Annual International Conference on Privacy, Security and Trust, 2023

Unbiased Locally Private Estimator for Polynomials of Laplacian Variables.

[BibT_eX]

[DOI]

Quentin Hillebrand

Vorapong Suppakitpaisarn

Proceedings of the 29th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2023

A Joint Permute-and-Flip and Its Enhancement for Large-Scale Genomic Statistical Analysis.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Data Mining, 2023

Privacy-Preserving Genomic Statistical Analysis Under Local Differential Privacy.

[BibT_eX]

[DOI]

Proceedings of the Data and Applications Security and Privacy XXXVII, 2023

The Fine-Grained Complexity of Approximately Counting Proper Connected Colorings (Extended Abstract).

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Optimization and Applications, 2023

(ε, k)-Randomized Anonymization: ε-Differentially Private Data Sharing with k-Anonymity.

[BibT_eX]

[DOI]

Eizen Kimura

Proceedings of the 16th International Joint Conference on Biomedical Engineering Systems and Technologies, 2023

2022

Efficient and Highly Accurate Differentially Private Statistical Genomic Analysis using Discrete Fourier Transform.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Trust, 2022

Developing Language Resources and NLP Tools for the North Korean Language.

[BibT_eX]

[DOI]

Yeojoo Jeon

Proceedings of the Thirteenth Language Resources and Evaluation Conference, 2022

Counting on a Rainbow Connection (text not included).

[BibT_eX]

Proceedings of the 23rd Italian Conference on Theoretical Computer Science, 2022

Diamonds are Forever in the Blockchain: Geometric Polyhedral Point-Set Pattern Matching.

[BibT_eX]

Proceedings of the 34th Canadian Conference on Computational Geometry, 2022

2021

Compression of Multiple k-Mer Sets by Iterative SPSS Decomposition.

[BibT_eX]

[DOI]

Kazushi Kitaya

Proceedings of the 21st International Workshop on Algorithms in Bioinformatics, 2021

UDON: Unsupervised Data SelectiON for Biomedical Entity Recognition.

[BibT_eX]

[DOI]

Proceedings of the ICCBD 2021: 4th International Conference on Computing and Big Data, Wuhan, China, November 27, 2021

Differentially Private Linkage Analysis with TDT - the case of two affected children per family.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020

Nanopore basecalling from a perspective of instance segmentation.

[BibT_eX]

[DOI]

BMC Bioinform., April, 2020

Analyzing the Effect of Multi-task Learning for Biomedical Named Entity Recognition.

[BibT_eX]

[DOI]

CoRR, 2020

Hierarchical Multi Task Learning with Subword Contextual Embeddings for Languages with Rich Morphology.

[BibT_eX]

[DOI]

Tunga Güngör

CoRR, 2020

Wear Leveling Revisited.

[BibT_eX]

[DOI]

Proceedings of the 31st International Symposium on Algorithms and Computation, 2020

Subword Contextual Embeddings for Languages with Rich Morphology.

[BibT_eX]

[DOI]

Tunga Güngör

Proceedings of the 19th IEEE International Conference on Machine Learning and Applications, 2020

Transfer Learning for Biomedical Question Answering.

[BibT_eX]

[DOI]

Proceedings of the Working Notes of CLEF 2020, 2020

2019

Application-Oriented Succinct Data Structures for Big Data.

[BibT_eX]

[DOI]

Rev. Socionetwork Strateg., 2019

Preface for the Special Issue on the Project "Foundation of Innovative Algorithms for Big Data".

[BibT_eX]

[DOI]

Rev. Socionetwork Strateg., 2019

Efficient Approximate 3-Dimensional Point Set Matching Using Root-Mean-Square Deviation Score.

[BibT_eX]

[DOI]

IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2019

2018

Succinct Oblivious RAM.

[BibT_eX]

[DOI]

Proceedings of the 35th Symposium on Theoretical Aspects of Computer Science, 2018

2016

Fast Classification of Protein Structures by an Alignment-Free Kernel.

[BibT_eX]

[DOI]

Proceedings of the String Processing and Information Retrieval, 2016

2015

An O(m, log m)-Time Algorithm for Detecting Superbubbles.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2015

Guest Editorial for the 25th International Conference on Genome Informatics (GIW/ISCB-Asia 2014).

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2015

Locating controlling regions of neural networks using constrained evolutionary computation.

[BibT_eX]

[DOI]

Mohammad A. Eita

Amin A. Shoukry

Proceedings of the IEEE Congress on Evolutionary Computation, 2015

Malphite: A convolutional neural network and ensemble learning based protein secondary structure predictor.

[BibT_eX]

[DOI]

Yang Li

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

Editorial.

[BibT_eX]

[DOI]

J. Bioinform. Comput. Biol., 2014

Improving miRNA Classification Using an Exhaustive Set of Features.

[BibT_eX]

[DOI]

Sherin M. ElGokhy

Amin A. Shoukry

Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014

SVEM: A Structural Variant Estimation Method Using Multi-mapped Reads on Breakpoints.

[BibT_eX]

[DOI]

Yumi Yamaguchi-Kabata

Masao Nagasaki

Proceedings of the Algorithms for Computational Biology - First International Conference, 2014

2013

Detecting Superbubbles in Assembly Graphs.

[BibT_eX]

[DOI]

Kunihiko Sadakane

Proceedings of the Algorithms in Bioinformatics - 13th International Workshop, 2013

The Gapped Spectrum Kernel for Support Vector Machines.

[BibT_eX]

[DOI]

Proceedings of the Machine Learning and Data Mining in Pattern Recognition, 2013

2012

Max-Shift BM and Max-Shift Horspool: Practical Fast Exact String Matching Algorithms.

[BibT_eX]

[DOI]

Mohammed Sahli

J. Inf. Process., 2012

LB3D: A Protein Three-Dimensional Substructure Search Program Based on the Lower Bound of a Root Mean Square Deviation Value.

[BibT_eX]

[DOI]

Genki Terashi

Mayuko Takeda-Shitaka

J. Comput. Biol., 2012

Population Model-Based Inter-Diplotype Similarity Measure for Accurate Diplotype Clustering.

[BibT_eX]

[DOI]

J. Comput. Biol., 2012

Succinct de Bruijn Graphs.

[BibT_eX]

[DOI]

Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012

2011

A Subpath Kernel for Rooted Unordered Trees.

[BibT_eX]

[DOI]

Proceedings of the Advances in Knowledge Discovery and Data Mining, 2011

An Index Structure for Spaced Seed Search.

[BibT_eX]

[DOI]

Proceedings of the Algorithms and Computation - 22nd International Symposium, 2011

2010

Fast Hinge Detection Algorithms for Flexible Protein Structures.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2010

Searching Protein Three-Dimensional Structures in Faster Than Linear Time.

[BibT_eX]

[DOI]

J. Comput. Biol., 2010

Searching Protein 3-D Structures in Linear Time.

[BibT_eX]

[DOI]

J. Comput. Biol., 2010

Geometric suffix tree: Indexing protein 3-D structures.

[BibT_eX]

[DOI]

J. ACM, 2010

Linear-time protein 3-D structure searching with insertions and deletions.

[BibT_eX]

[DOI]

Jesper Jansson

Kunihiko Sadakane

Algorithms Mol. Biol., 2010

2009

Lazy Suffix Array: The Data Structure for Online Construction and Pattern Searching.

[BibT_eX]

[DOI]

Ben Hachimori

IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2009

2007

Efficient Substructure RMSD Query Algorithms.

[BibT_eX]

[DOI]

J. Comput. Biol., 2007

Prefix-Shuffled Geometric Suffix Tree.

[BibT_eX]

[DOI]

Proceedings of the String Processing and Information Retrieval, 2007

2006

Geometric Suffix Tree: A New Index Structure for Protein 3-D Structures.

[BibT_eX]

[DOI]

Proceedings of the Combinatorial Pattern Matching, 17th Annual Symposium, 2006

2004

Efficient filtering methods for clustering cDNAs with spliced sequence alignment.

[BibT_eX]

[DOI]

Hisashi Kashima

Akihiko Konagaya

Bioinform., 2004

Generalization of a Suffix Tree for RNA Structural Pattern Matching.

[BibT_eX]

[DOI]

Algorithmica, 2004

2003

The web server of IBM's Bioinformatics and Pattern Discovery group.

[BibT_eX]

[DOI]

Nucleic Acids Res., 2003

Constructing the Suffix Tree of a Tree with a Large Alphabet.

[BibT_eX]

[DOI]

IEICE Trans. Fundam. Electron. Commun. Comput. Sci., 2003

Match Chaining Algorithms for cDNA Mapping.

[BibT_eX]

[DOI]

Igor Kurochkin

Proceedings of the Algorithms in Bioinformatics, Third International Workshop, 2003

2002

Optimal Online Algorithms for an Electronic Commerce Money Distribution System.

[BibT_eX]

[DOI]

Hiroshi Kawazoe

Takeshi Tokuyama

Algorithmica, 2002

2000

Computing the nxm Shortest Paths Efficiently.

[BibT_eX]

[DOI]

ACM J. Exp. Algorithmics, 2000

1999

Optimal On-line Algorithms for an Electronic Commerce Money Distribution System.

[BibT_eX]

[DOI]

Hiroshi Kawazoe

Takeshi Tokuyama

Proceedings of the Tenth Annual ACM-SIAM Symposium on Discrete Algorithms, 1999

Computing the <i>n × m</i> Shortest Paths Efficently.

[BibT_eX]

[DOI]

Proceedings of the Algorithm Engineering and Experimentation, 1999

1997

New Flexible Approaches for Multiple Sequence Alignment.

[BibT_eX]

[DOI]