Terrence S. Furey

According to our database, Terrence S. Furey authored at least 14 papers between 2000 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

CoVar: A generalizable machine learning approach to identify the coordinated regulators driving variational gene expression.

Satyaki Roy, Shehzad Z. Sheikh, Terrence S. Furey

PLoS Comput. Biol., 2024

2023

<tt>ROCCO</tt>: a robust method for detection of open chromatin via convex optimization.

Nolan H. Hamilton, Terrence S. Furey

Bioinform., December, 2023

2017

Correcting nucleotide-specific biases in high-throughput sequencing data.

Jeremy R. Wang, Bryan Quach, Terrence S. Furey

BMC Bioinform., 2017

DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter.

Bryan Quach, Terrence S. Furey

Bioinform., 2017

2016

A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data.

Zheng Xu, Guosheng Zhang, Fulai Jin, Mengjie Chen, Terrence S. Furey, Patrick F. Sullivan, Zhaohui S. Qin, Ming Hu, Yun Li

Bioinform., 2016

2010

A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins.

Mats Ensterö, Örjan Åkerborg, Daniel Lundin, Bei Wang, Terrence S. Furey, Marie Öhman, Jens Lagergren

BMC Bioinform., 2010

2008

F-Seq: a feature density estimator for high-throughput sequence tags.

Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey

Bioinform., 2008

2007

Genomic sweeping for hypermethylated genes.

Liang Goh, Susan K. Murphy, Sayan Mukherjee, Terrence S. Furey

Bioinform., 2007

2006

Evidence of Influence of Genomic DNA Sequence on Human X Chromosome Inactivation.

Zhong Wang, Huntington F. Willard, Sayan Mukherjee, Terrence S. Furey

PLoS Comput. Biol., 2006

The UCSC Genome Browser Database: update 2006.

Angela S. Hinrichs, Donna Karolchik, Robert Baertsch, Galt P. Barber, Gill Bejerano, Hiram Clawson, Mark Diekhans, Terrence S. Furey, Rachel A. Harte, Fan Hsu, Jennifer Hillman-Jackson, Robert M. Kuhn, Jakob Skou Pedersen, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Adam C. Siepel, Kayla E. Smith, Charles W. Sugnet, A. Sultan-Qurraie, Daryl J. Thomas, Heather Trumbower, Ryan J. Weber, M. Weirauch, Ann S. Zweig, David Haussler, W. James Kent

Nucleic Acids Res., 2006

2004

The UCSC Table Browser data retrieval tool.

Donna Karolchik, Angela S. Hinrichs, Terrence S. Furey, Krishna M. Roskin, Charles W. Sugnet, David Haussler, W. James Kent

Nucleic Acids Res., 2004

2003

The UCSC Genome Browser Database.

Donna Karolchik, Robert Baertsch, Mark Diekhans, Terrence S. Furey, Angela S. Hinrichs, Yontao Lu, Krishna M. Roskin, Matt Schwartz, Charles W. Sugnet, Daryl J. Thomas, Ryan J. Weber, David Haussler, W. James Kent

Nucleic Acids Res., 2003

2001

Promoter Region-Based Classification of Genes.

Paul Pavlidis, Terrence S. Furey, M. Liberto, David Haussler, William Noble Grundy

Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

2000

Support vector machine classification and validation of cancer tissue samples using microarray expression data.

Terrence S. Furey, Nello Cristianini, Nigel Duffy, David W. Bednarski, Michèl Schummer, David Haussler

Bioinform., 2000