Tatsuya Kushida

According to our database, Tatsuya Kushida authored at least 19 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Homeostasis imbalance process ontology: a study on COVID-19 infectious processes.

Yuki Yamagata, Tatsuya Kushida, Shuichi Onami, Hiroshi Masuya

BMC Medical Informatics Decis. Mak., January, 2024

2023

Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource and disease datasets.

Tarcisio Mendes de Farias, Tatsuya Kushida, Ana Claudia Sima, Christophe Dessimoz, Hirokazu Chiba, Frédéric B. Bastian, Hiroshi Masuya

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

2022

Ontology Integration for Discovering Bioresources Contributing to Medical Science Research.

Tatsuya Kushida, Daiki Usuda, Toyoyuki Takada, Yuki Yamagata, Hiroshi Masuya

Proceedings of the International Conference on Biomedical Ontology 2022 (ICBO), Ann Arbor, Michigan, USA, September 25, 2022

2021

A Community Effort for COVID-19 Ontology Harmonization.

Asiyah Yu Lin, Yuki Yamagata, William D. Duncan, Leigh C. Carmody, Tatsuya Kushida, Hiroshi Masuya, John Beverley, Biswanath Dutta, Michael DeBellis, Zoë May Pendlington, Paola Roncaglia, Yongqun He

Proceedings of the International Conference on Biomedical Ontologies 2021 co-located with the Workshop on Ontologies for the Behavioural and Social Sciences (OntoBess 2021) as part of the Bolzano Summer of Knowledge (BOSK 2021), 2021

2020

BioHackathon 2015: Semantics of data for life sciences and reproducible research.

Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi

F1000Research, 2020

2019

Interconnection of Biological Knowledge Using NikkajiRDF and Interlinking Ontology for Biological Concepts.

Tatsuya Kushida, Kouji Kozaki, Takahiro Kawamura, Yuka Tateisi, Yasunori Yamamoto, Toshihisa Takagi

New Gener. Comput., 2019

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services.

Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi

F1000Research, 2019

Investigating Schema Definitions Using RDFS and OWL 2 for RDF Databases in Life Sciences.

Atsuko Yamaguchi, Tatsuya Kushida, Yasunori Yamamoto, Kouji Kozaki

Proceedings of the Semantic Technology - 9th Joint International Conference, 2019

Building Knowledge Graph Across Different Subdomains Using Interlinking Ontology for Biomedical Concepts.

Kouji Kozaki, Tatsuya Kushida, Yasunori Yamamoto, Toshihisa Takagi

Proceedings of the Semantic Technology - 9th Joint International Conference, 2019

Reconstruction of Hierarchical Structures in a Thesaurus-based Ontology through Curation by Domain Experts.

Tatsuya Kushida, Kouji Kozaki, Yasunori Yamamoto, Atsuko Yamaguchi, Takahiro Kawamura, Takako Nakagawa, Yuka Tateisi, Toshihisa Takagi

Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019

2018

NBDC RDF portal: a comprehensive repository for semantic data in life sciences.

Shuichi Kawashima, Toshiaki Katayama, Hideki Hatanaka, Tatsuya Kushida, Toshihisa Takagi

Database J. Biol. Databases Curation, 2018

Inference of Functions, Roles, and Applications of Chemicals Using Linked Open Data and Ontologies.

Tatsuya Kushida, Kouji Kozaki, Takahiro Kawamura, Yuka Tateisi, Yasunori Yamamoto, Toshihisa Takagi

Proceedings of the Semantic Technology - 8th Joint International Conference, 2018

2017

Refined JST Thesaurus Extended with Data from Other Open Life Science Data Sources.

Tatsuya Kushida, Yuka Tateisi, Takeshi Masuda, Katsutaro Watanabe, Katsuji Matsumura, Takahiro Kawamura, Kouji Kozaki, Toshihisa Takagi

Proceedings of the Semantic Technology - 7th Joint International Conference, 2017

Efficient Construction of a New Ontology for Life Sciences by Sub-classifying Related Terms in the Japan Science, Technology Agency Thesaurus.

Tatsuya Kushida, Kouji Kozaki, Yuka Tateisi, Katsutaro Watanabe, Takeshi Masuda, Katsuji Matsumura, Takahiro Kawamura, Toshihisa Takagi

Proceedings of the 8th International Conference on Biomedical Ontology (ICBO 2017), Newcastle-upon-Tyne, United Kingdom, September 13th, 2017

2016

Expanding Science and Technology Thesauri from Bibliographic Datasets Using Word Embedding.

Takahiro Kawamura, Kouji Kozaki, Tatsuya Kushida, Katsutaro Watanabe, Katsuji Matsumura

Proceedings of the 28th IEEE International Conference on Tools with Artificial Intelligence, 2016

2015

J-GLOBAL knowledge: Japan's Largest Linked Open Data for Science and Technology.

Takahiro Kimura, Takahiro Kawamura, Katsutaro Watanabe, Naoya Matsumoto, Tomonori Sato, Tatsuya Kushida, Katsuji Matsumura

Proceedings of the ISWC 2015 Posters & Demonstrations Track co-located with the 14th International Semantic Web Conference (ISWC-2015), 2015

2011

An Advanced Strategy for Integration of Biological Measurement Data.

Hiroshi Masuya, Georgios V. Gkoutos, Nobuhiko Tanaka, Kazunori Waki, Yoshihiro Okuda, Tatsuya Kushida, Norio Kobayashi, Koji Doi, Kouji Kozaki, Robert Hoehndorf, Shigeharu Wakana, Tetsuro Toyoda, Riichiro Mizoguchi

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2009

Collection of Disease Networks by Hybrid Curation Method and the Application for Pathway Analysis.

Tatsuya Kushida, Takao Asanuma, Yoshihiro Okuda, Yo Shidahara, Toshihisa Takagi

Proceedings of the 2009 International Conference on Complex, 2009

2006

Event Ontology: A Pathway-Centric Ontology for Biological Processes.

Tatsuya Kushida, Toshihisa Takagi, Ken-ichiro Fukuda

Proceedings of the Biocomputing 2006, 2006