Taoyang Wu

According to our database, Taoyang Wu authored at least 38 papers between 2006 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Planar Rooted Phylogenetic Networks.

Vincent Moulton, Taoyang Wu

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Encoding and ordering <i>X</i>-cactuses.

Andrew R. Francis, Katharina T. Huber, Vincent Moulton, Taoyang Wu

Adv. Appl. Math., 2023

2022

Posets and Spaces of $k$-Noncrossing RNA Structures.

Vincent Moulton, Taoyang Wu

SIAM J. Discret. Math., 2022

Evaluating the performance of dropout imputation and clustering methods for single-cell RNA sequencing data.

Junlin Xu, Lingyu Cui, Jujuan Zhuang, Yajie Meng, Pingping Bing, Binsheng He, Geng Tian, Choi Kwok Pui, Taoyang Wu, Bing Wang, Jialiang Yang

Comput. Biol. Medicine, 2022

2021

Significance of differential allelic expression in phenotypic plasticity and evolutionary potential of microbial eukaryotes.

Ben P. Tatman, Thomas Mock, Taoyang Wu, Cock van Oosterhout

Quant. Biol., December, 2021

2019

Treewidth of display graphs: bounds, brambles and applications.

Remie Janssen, Mark Jones, Steven Kelk, Georgios Stamoulis, Taoyang Wu

J. Graph Algorithms Appl., 2019

Hierarchies from Lowest Stable Ancestors in Nonbinary Phylogenetic Networks.

Katharina T. Huber, Vincent Moulton, Taoyang Wu

J. Classif., 2019

2018

UPGMA and the normalized equidistant minimum evolution problem.

Vincent Moulton, Andreas Spillner, Taoyang Wu

Theor. Comput. Sci., 2018

Treewidth distance on phylogenetic trees.

Steven Kelk, Georgios Stamoulis, Taoyang Wu

Theor. Comput. Sci., 2018

SPECTRE: a suite of phylogenetic tools for reticulate evolution.

Sarah Bastkowski, Daniel Mapleson, Andreas Spillner, Taoyang Wu, Monika Balvociute, Vincent Moulton

Bioinform., 2018

2017

A cubic-time algorithm for computing the trinet distance between level-1 networks.

Vincent Moulton, James Oldman, Taoyang Wu

Inf. Process. Lett., 2017

Quarnet inference rules for level-1 networks.

Katharina T. Huber, Vincent Moulton, Charles Semple, Taoyang Wu

CoRR, 2017

Binets: fundamental building blocks for phylogenetic networks.

Leo van Iersel, Vincent Moulton, Eveline de Swart, Taoyang Wu

CoRR, 2017

Reconstructing Phylogenetic Level-1 Networks from Nondense Binet and Trinet Sets.

Katharina T. Huber, Leo van Iersel, Vincent Moulton, Céline Scornavacca, Taoyang Wu

Algorithmica, 2017

2016

Reduction rules for the maximum parsimony distance on phylogenetic trees.

Steven Kelk, Mareike Fischer, Vincent Moulton, Taoyang Wu

Theor. Comput. Sci., 2016

The minimum evolution problem is hard: a link between tree inference and graph clustering problems.

Sarah Bastkowski, Vincent Moulton, Andreas Spillner, Taoyang Wu

Bioinform., 2016

2015

Optimal realizations of two-dimensional, totally-decomposable metrics.

Sven Herrmann, Jack H. Koolen, Alice Lesser, Vincent Moulton, Taoyang Wu

Discret. Math., 2015

The combinatorics of tandem duplication.

Luca Penso Dolfin, Taoyang Wu, Chris D. Greenman

Discret. Appl. Math., 2015

A parsimony-based metric for phylogenetic trees.

Vincent Moulton, Taoyang Wu

Adv. Appl. Math., 2015

2014

Representing Partitions on Trees.

Katharina T. Huber, Vincent Moulton, Charles Semple, Taoyang Wu

SIAM J. Discret. Math., 2014

2013

Degree distribution of large networks generated by the partial duplication model.

Si Li, Kwok Pui Choi, Taoyang Wu

Theor. Comput. Sci., 2013

Maximum Likelihood Inference of the Evolutionary History of a PPI Network from the Duplication History of Its Proteins.

Si Li, Kwok Pui Choi, Taoyang Wu, Louxin Zhang

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

On the Neighborhoods of Trees.

Peter J. Humphries, Taoyang Wu

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

Obtaining splits from cut sets of tight spans.

Andreas W. M. Dress, Vincent Moulton, Andreas Spillner, Taoyang Wu

Discret. Appl. Math., 2013

A Linear-Time Algorithm for Reconciliation of Non-binary Gene Tree and Binary Species Tree.

Yu Zheng, Taoyang Wu, Louxin Zhang

Proceedings of the Combinatorial Optimization and Applications, 2013

2012

Injective optimal realizations of finite metric spaces.

Jack H. Koolen, Alice Lesser, Vincent Moulton, Taoyang Wu

Discret. Math., 2012

Reconstruction of Network Evolutionary History from Extant Network Topology and Duplication History.

Si Li, Kwok Pui Choi, Taoyang Wu, Louxin Zhang

Proceedings of the Bioinformatics Research and Applications - 8th International Symposium, 2012

2011

The sum of the distances between the leaves of a tree and the 'semi-regular' property.

László A. Székely, Hua Wang, Taoyang Wu

Discret. Math., 2011

Structural properties of the reconciliation space and their applications in enumerating nearly-optimal reconciliations between a gene tree and a species tree.

Taoyang Wu, Louxin Zhang

BMC Bioinform., 2011

Network model and efficient method for detecting relative duplications or horizontal gene transfers.

Louxin Zhang, Yen Kaow Ng, Taoyang Wu, Yu Zheng

Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

2010

The complexity of the weight problem for permutation and matrix groups.

Peter J. Cameron, Taoyang Wu

Discret. Math., 2010

A note on single-linkage equivalence.

Andreas W. M. Dress, Taoyang Wu, XiaoMing Xu

Appl. Math. Lett., 2010

2009

Refining Phylogenetic Trees Given Additional Data: An Algorithm Based on Parsimony.

Taoyang Wu, Vincent Moulton, Mike A. Steel

IEEE ACM Trans. Comput. Biol. Bioinform., 2009

On the guessing number of shift graphs.

Taoyang Wu, Peter J. Cameron, Søren Riis

J. Discrete Algorithms, 2009

Barriers in metric spaces.

Andreas W. M. Dress, Vincent Moulton, Andreas Spillner, Taoyang Wu

Appl. Math. Lett., 2009

2007

The complexity of the Weight Problem for permutation groups.

Peter J. Cameron, Taoyang Wu

Electron. Notes Discret. Math., 2007

2006

On the Subgroup Distance Problem.

Christoph Buchheim, Peter J. Cameron, Taoyang Wu

Electron. Colloquium Comput. Complex., 2006

Extremal Sequence Theory.

Taoyang Wu

Proceedings of the Algorithms and Complexity in Durham 2006, 2006