Tamir Tuller
Orcid: 0000-0003-4194-7068
According to our database1,
Tamir Tuller
authored at least 68 papers
between 2004 and 2024.
Collaborative distances:
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Bibliography
2024
PLoS Comput. Biol., 2024
Proceedings of the Comparative Genomics - 21st International Conference, 2024
Proceedings of the Comparative Genomics - 21st International Conference, 2024
2022
Using Computational Synthetic Biology Tools to Modulate Gene Expression Within a Microbiome.
Proceedings of the Comparative Genomics - 19th International Conference, 2022
2021
New computational model for miRNA-mediated repression reveals novel regulatory roles of miRNA bindings inside the coding region.
Bioinform., 2021
2020
Whole cell biophysical modeling of codon-tRNA competition reveals novel insights related to translation dynamics.
PLoS Comput. Biol., 2020
Exploring Potential Signals of Selection for Disordered Residues in Prokaryotic and Eukaryotic Proteins.
Genom. Proteom. Bioinform., 2020
CSN: unsupervised approach for inferring biological networks based on the genome alone.
BMC Bioinform., 2020
Novel Driver Synonymous Mutations in the Coding Regions of GCB Lymphoma Patients Improve the Transcription Levels of BCL2.
Proceedings of the Mathematical and Computational Oncology, 2020
2019
Correction: Computational analysis of the oscillatory behavior at the translation level induced by mRNA levels oscillations due to finite intracellular resources.
PLoS Comput. Biol., 2019
Bioinform., 2019
Bioinform., 2019
2018
IEEE ACM Trans. Comput. Biol. Bioinform., 2018
Computational analysis of the oscillatory behavior at the translation level induced by mRNA levels oscillations due to finite intracellular resources.
PLoS Comput. Biol., 2018
BMC Bioinform., 2018
Universal evolutionary selection for high dimensional silent patterns of information hidden in the redundancy of viral genetic code.
Bioinform., 2018
2017
Unsupervised detection of regulatory gene expression information in different genomic regions enables gene expression ranking.
BMC Bioinform., 2017
Bioinform., 2017
Proceedings of the Comparative Genomics - 15th International Workshop, 2017
2016
Evidence of a Direct Evolutionary Selection for Strong Folding and Mutational Robustness Within HIV Coding Regions.
J. Comput. Biol., 2016
Proceedings of the 55th IEEE Conference on Decision and Control, 2016
2015
PLoS Comput. Biol., 2015
Exploiting hidden information interleaved in the redundancy of the genetic code without prior knowledge.
Bioinform., 2015
2014
Maximizing Protein Translation Rate in the Ribosome Flow Model: The Homogeneous Case.
IEEE ACM Trans. Comput. Biol. Bioinform., 2014
IEEE Trans. Biomed. Circuits Syst., 2014
Proceedings of the 53rd IEEE Conference on Decision and Control, 2014
2013
Explicit Expression for the Steady-State Translation Rate in the Infinite-Dimensional Homogeneous Ribosome Flow Model.
IEEE ACM Trans. Comput. Biol. Bioinform., 2013
PLoS Comput. Biol., 2013
Transcript features alone enable accurate prediction and understanding of gene expression in S. cerevisiae.
BMC Bioinform., 2013
2012
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
Determinants of Translation Elongation Speed and Ribosomal Profiling Biases in Mouse Embryonic Stem Cells.
PLoS Comput. Biol., 2012
Efficient Manipulations of Synonymous Mutations for Controlling Translation Rate: An Analytical Approach.
J. Comput. Biol., 2012
2011
IEEE ACM Trans. Comput. Biol. Bioinform., 2011
PLoS Comput. Biol., 2011
BMC Bioinform., 2011
Proceedings of the Research in Computational Molecular Biology, 2011
2010
Reconstructing Ancestral Genomic Sequences by Co-Evolution: Formal Definitions, Computational Issues, and Biological Examples.
J. Comput. Biol., 2010
Discovering local patterns of co - evolution: computational aspects and biological examples.
BMC Bioinform., 2010
Comparative classification of species and the study of pathway evolution based on the alignment of metabolic pathways.
BMC Bioinform., 2010
2009
Parsimony Score of Phylogenetic Networks: Hardness Results and a Linear-Time Heuristic.
IEEE ACM Trans. Comput. Biol. Bioinform., 2009
J. Comput. Biol., 2009
The Net-HMM Approach: Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models.
J. Bioinform. Comput. Biol., 2009
Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biological Examples.
Proceedings of the Comparative Genomics, International Workshop, 2009
2008
Inferring horizontal transfers in the presence of rearrangements by the minimum evolution criterion.
Bioinform., 2008
Novel Phylogenetic Network Inference by Combining Maximum Likelihood and Hidden Markov Models.
Proceedings of the Algorithms in Bioinformatics, 8th International Workshop, 2008
Proceedings of the Comparative Genomics, International Workshop, 2008
Editing Bayesian Networks: A New Approach for Combining Prior Knowledge and Gene Expression Measurements for Researching Diseases.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008
2007
Determinants of Protein Abundance and Translation Efficiency in <i>S. cerevisiae</i>.
PLoS Comput. Biol., 2007
J. Comput. Biol., 2007
Biological Networks: Comparison, Conservation, and Evolution via Relative Description Length.
J. Comput. Biol., 2007
Bioinform., 2007
Inferring Models of Rearrangements, Recombinations, and Horizontal Transfers by the Minimum Evolution Criterion.
Proceedings of the Algorithms in Bioinformatics, 7th International Workshop, 2007
A New Linear-Time Heuristic Algorithm for Computing the Parsimony Score of Phylogenetic Networks: Theoretical Bounds and Empirical Performance.
Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007
2006
J. Comput. Biol., 2006
Proceedings of the Research in Computational Molecular Biology, 2006
2005
Time-Window Analysis of Developmental Gene Expression Data with Multiple Genetic Backgrounds.
Proceedings of the Algorithms in Bioinformatics, 5th International Workshop, 2005
Proceedings of the Research in Computational Molecular Biology, 2005
Proceedings of the Research in Computational Molecular Biology, 2005
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005
2004
Proceedings of the Algorithms in Bioinformatics, 4th International Workshop, 2004