Takatomo Fujisawa

According to our database, Takatomo Fujisawa authored at least 26 papers between 2010 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2025

DFAST_QC: quality assessment and taxonomic identification tool for prokaryotic Genomes.

Mohamed Elmanzalawi, Takatomo Fujisawa, Hiroshi Mori, Yasukazu Nakamura, Yasuhiro Tanizawa

BMC Bioinform., December, 2025

2024

Make RDF data more inter-connectable.

Yasunori Yamamoto, Takatomo Fujisawa

Proceedings of the 15th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2024

2023

DNA Data Bank of Japan (DDBJ) update report 2022.

Yasuhiro Tanizawa, Takatomo Fujisawa, Yuichi Kodama, Takehide Kosuge, Jun Mashima, Tomoya Tanjo, Yasukazu Nakamura

Nucleic Acids Res., January, 2023

To build densely connected Web of RDF data.

Yasunori Yamamoto, Takatomo Fujisawa

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

Genome Variation Ontology for annotation of complex structural variations.

Shuichi Kawashima, Takatomo Fujisawa, Toshiaki Katayama

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

2022

DNA Data Bank of Japan (DDBJ) update report 2021.

Toshihisa Okido, Yuichi Kodama, Jun Mashima, Takehide Kosuge, Takatomo Fujisawa, Osamu Ogasawara

Nucleic Acids Res., 2022

2021

DDBJ update: streamlining submission and access of human data.

Asami Fukuda, Yuichi Kodama, Jun Mashima, Takatomo Fujisawa, Osamu Ogasawara

Nucleic Acids Res., 2021

2020

DDBJ Database updates and computational infrastructure enhancement.

Osamu Ogasawara, Yuichi Kodama, Jun Mashima, Takehide Kosuge, Takatomo Fujisawa

Nucleic Acids Res., 2020

BioHackathon 2015: Semantics of data for life sciences and reproducible research.

Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi

F1000Research, 2020

2019

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services.

Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi

F1000Research, 2019

TogoGenome/TogoStanza: modularized Semantic Web genome database.

Toshiaki Katayama, Shuichi Kawashima, Shinobu Okamoto, Yuki Moriya, Hirokazu Chiba, Yuki Naito, Takatomo Fujisawa, Hiroshi Mori, Toshihisa Takagi

Database J. Biol. Databases Curation, 2019

2018

DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.

Yasuhiro Tanizawa, Takatomo Fujisawa, Yasukazu Nakamura

Bioinform., 2018

2017

DNA Data Bank of Japan.

Jun Mashima, Yuichi Kodama, Takatomo Fujisawa, Toshiaki Katayama, Yoshihiro Okuda, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi

Nucleic Acids Res., 2017

CyanoBase: a large-scale update on its 20th anniversary.

Takatomo Fujisawa, Rei Narikawa, Shin-ichi Maeda, Satoru Watanabe, Yu Kanesaki, Koichi Kobayashi, Jiro Nomata, Mitsumasa Hanaoka, Mai Watanabe, Shigeki Ehira, Eiji Suzuki, Koichiro Awai, Yasukazu Nakamura

Nucleic Acids Res., 2017

2016

DNA data bank of Japan (DDBJ) progress report.

Jun Mashima, Yuichi Kodama, Takehide Kosuge, Takatomo Fujisawa, Toshiaki Katayama, Hideki Nagasaki, Yoshihiro Okuda, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Yasukazu Nakamura, Toshihisa Takagi

Nucleic Acids Res., 2016

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.

Jerven T. Bolleman, Christopher J. Mungall, Francesco Strozzi, Joachim Baran, Michel Dumontier, Raoul Jean Pierre Bonnal, Robert M. Buels, Robert Hoehndorf, Takatomo Fujisawa, Toshiaki Katayama, Peter J. A. Cock

J. Biomed. Semant., 2016

2015

The BioMart community portal: an innovative alternative to large, centralized data repositories.

Damian Smedley, Syed Haider, Steffen Durinck, Luca Pandini, Paolo Provero, James E. Allen, Olivier Arnaiz, Mohammad Hamza Awedh, Richard A. Baldock, Giulia Barbiera, Philippe Bardou, Tim Beck, Andrew Blake, Merideth Bonierbale, Anthony J. Brookes, Gabriele Bucci, Iwan Buetti, Sarah W. Burge, Cédric Cabau, Joseph W. Carlson, Claude Chelala, Charalambos Chrysostomou, Davide Cittaro, Olivier Collin, Raul Cordova, Rosalind J. Cutts, Erik Dassi, Alex Di Génova, Anis Djari, Anthony Esposito, Heather Estrella, Eduardo Eyras, Julio Fernandez-Banet, Simon A. Forbes, Robert C. Free, Takatomo Fujisawa, Emanuela Gadaleta, Jose M. Garcia-Manteiga, David M. Goodstein, Kristian A. Gray, José Afonso Guerra-Assunção, Bernard Haggarty, Dongjin Han, Byungwoo Han, Todd W. Harris, Jayson Harshbarger, Robert K. Hastings, Richard D. Hayes, Claire Hoede, Shen Hu, Zhi-Liang Hu, Lucie N. Hutchins, Zhengyan Kan, Hideya Kawaji, Aminah-Olivia Keliet, Arnaud Kerhornou, Sunghoon Kim, Rhoda Kinsella, Christophe Klopp, Lei Kong, Daniel Lawson, Dejan Lazarevic, Ji-Hyun Lee, Thomas Letellier, Chuan-Yun Li, Pietro Liò, Chu-Jun Liu, Jie Luo, Alejandro Maass, Jérôme Mariette, Thomas Maurel, Stefania Merella, Azza Mostafa Mohamed, François Moreews, Nabihoudine Ibouniyamine, Nelson Ndegwa, Céline Noirot, Christian Perez-Llamas, Michael Primig, Alessandro Quattrone, Hadi Quesneville, Davide Rambaldi, James M. Reecy, Michela Riba, Steven Rosanoff, Amna Ali Saddiq, Elisa Salas, Olivier Sallou, Rebecca Shepherd, Reinhard Simon, Linda Sperling, William Spooner, Daniel M. Staines, Delphine Steinbach, Kevin R. Stone, Elia Stupka, Jon W. Teague, Abu Z. Dayem Ullah, Jun Wang, Doreen Ware, Marie Wong-Erasmus, Ken Youens-Clark, Amonida Zadissa, Shi-Jian Zhang, Arek Kasprzyk

Nucleic Acids Res., 2015

The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data.

Yuichi Kodama, Jun Mashima, Takehide Kosuge, Toshiaki Katayama, Takatomo Fujisawa, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura

Nucleic Acids Res., 2015

Implementation of linked data in the life sciences at BioHackathon 2011.

Kiyoko F. Aoki-Kinoshita, Akira R. Kinjo, Mizuki Morita, Yoshinobu Igarashi, Yi-an Chen, Yasumasa Shigemoto, Takatomo Fujisawa, Yukie Akune, Takeo Katoda, Anna Kokubu, Takaaki Mori, Mitsuteru Nakao, Shuichi Kawashima, Shinobu Okamoto, Toshiaki Katayama, Soichi Ogishima

J. Biomed. Semant., 2015

2014

DDBJ progress report: a new submission system for leading to a correct annotation.

Takehide Kosuge, Jun Mashima, Yuichi Kodama, Takatomo Fujisawa, Eli Kaminuma, Osamu Ogasawara, Kousaku Okubo, Toshihisa Takagi, Yasukazu Nakamura

Nucleic Acids Res., 2014

CyanoBase and RhizoBase: databases of manually curated annotations for cyanobacterial and rhizobial genomes.

Takatomo Fujisawa, Shinobu Okamoto, Toshiaki Katayama, Mitsuteru Nakao, Hidehisa Yoshimura, Hiromi Kajiya-Kanegae, Sumiko Yamamoto, Chiyoko Yano, Yuka Yanaka, Hiroko Maita, Takakazu Kaneko, Satoshi Tabata, Yasukazu Nakamura

Nucleic Acids Res., 2014

2013

H2DB: a heritability database across multiple species by annotating trait-associated genomic loci.

Eli Kaminuma, Takatomo Fujisawa, Yasuhiro Tanizawa, Naoko Sakamoto, Nori Kurata, Tokurou Shimizu, Yasukazu Nakamura

Nucleic Acids Res., 2013

2012

Semantic Integration of the Genome Annotations.

Toshiaki Katayama, Shinobu Okamoto, Shuichi Kawashima, Hiroshi Mori, Takatomo Fujisawa

Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

2011

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.

Toshiaki Katayama, Mark D. Wilkinson, Rutger A. Vos, Takeshi Kawashima, Shuichi Kawashima, Mitsuteru Nakao, Yasunori Yamamoto, Hong-Woo Chun, Atsuko Yamaguchi, Shin Kawano, Jan Aerts, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Bruno Aranda, Raoul Jean Pierre Bonnal, José María Fernández, Takatomo Fujisawa, Paul M. K. Gordon, Naohisa Goto, Syed Haider, Todd W. Harris, Takashi Hatakeyama, Isaac Ho, Masumi Itoh, Arek Kasprzyk, Nobuhiro Kido, Young-Joo Kim, Akira R. Kinjo, Fumikazu Konishi, Yulia Kovarskaya, Gregory Von Kuster, Alberto Labarga, Vachiranee Limviphuvadh, E. Luke McCarthy, Yasukazu Nakamura, Yunsun Nam, Kozo Nishida, Kunihiro Nishimura, Tatsuya Nishizawa, Soichi Ogishima, Tom Oinn, Shinobu Okamoto, Shujiro Okuda, Keiichiro Ono, Kazuki Oshita, Keun-Joon Park, Nicholas H. Putnam, Martin Senger, Jessica Severin, Yasumasa Shigemoto, Hideaki Sugawara, James Taylor, Oswaldo Trelles, Chisato Yamasaki, Riu Yamashita, Noriyuki Satoh, Toshihisa Takagi

J. Biomed. Semant., 2011

BioMart Central Portal: an open database network for the biological community.

Jonathan M. Guberman, Jiye Ai, Olivier Arnaiz, Joachim Baran, Andrew Blake, Richard A. Baldock, Claude Chelala, David Croft, Anthony Cros, Rosalind J. Cutts, Alex Di Génova, Simon A. Forbes, Takatomo Fujisawa, Emanuela Gadaleta, David M. Goodstein, Gunes Gundem, Bernard Haggarty, Syed Haider, Matthew Hall, Todd W. Harris, Robin Haw, Shen Hu, Simon J. Hubbard, Jack Hsu, Vivek Iyer, Philip Jones, Toshiaki Katayama, Rhoda Kinsella, Lei Kong, Daniel Lawson, Yong Liang, Núria López-Bigas, Jie Luo, Michael J. Lush, Jeremy C. Mason, François Moreews, Nelson Ndegwa, Darren J. Oakley, Christian Perez-Llamas, Michael Primig, Elena Rivkin, Steven Rosanoff, Rebecca Shepherd, Reinhard Simon, William C. Skarnes, Damian Smedley, Linda Sperling, William Spooner, Peter Stevenson, Kevin R. Stone, Jon W. Teague, Jun Wang, Jianxin Wang, Brett Whitty, David Tai Wai Wong, Marie Wong-Erasmus, Long Yao, Ken Youens-Clark, Christina K. Yung, Junjun Zhang, Arek Kasprzyk

Database J. Biol. Databases Curation, 2011

2010

CyanoBase: the cyanobacteria genome database update 2010.

Mitsuteru Nakao, Shinobu Okamoto, Mitsuyo Kohara, Tsunakazu Fujishiro, Takatomo Fujisawa, Shusei Sato, Satoshi Tabata, Takakazu Kaneko, Yasukazu Nakamura

Nucleic Acids Res., 2010