Taane G. Clark

According to our database, Taane G. Clark authored at least 14 papers between 2007 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Bayesian compositional regression with microbiome features via variational inference.

Darren A. V. Scott, Ernest D. Benavente, Julian Libiseller-Egger, Dmitry V. Fedorov, Jody Phelan, Elena Ilina, Polina O. Tikhonova, Alexander Kudryavstev, Julia Galeeva, Taane G. Clark, Alex Lewin

BMC Bioinform., December, 2023

2022

COVID-profiler: a webserver for the analysis of SARS-CoV-2 sequencing data.

Jody Phelan, Wouter Deelder, Daniel Ward, Susana G. Campino, Martin L. Hibberd, Taane G. Clark

BMC Bioinform., December, 2022

Portable sequencing of <i>Mycobacterium tuberculosis</i> for clinical and epidemiological applications.

Paula J. Gómez-González, Susana G. Campino, Jody Phelan, Taane G. Clark

Briefings Bioinform., 2022

2020

Robust detection of point mutations involved in multidrug-resistant Mycobacterium tuberculosis in the presence of co-occurrent resistance markers.

Julian Libiseller-Egger, Jody Phelan, Susana G. Campino, Fady R. Mohareb, Taane G. Clark

PLoS Comput. Biol., 2020

2019

SV-Pop: population-based structural variant analysis and visualization.

Matt Ravenhall, Susana G. Campino, Taane G. Clark

BMC Bioinform., 2019

PrimedRPA: primer design for recombinase polymerase amplification assays.

Matthew Higgins, Matt Ravenhall, Daniel Ward, Jody Phelan, Amy Ibrahim, Matthew S. Forrest, Taane G. Clark, Susana G. Campino

Bioinform., 2019

2015

PhyTB: Phylogenetic tree visualisation and sample positioning for M. tuberculosis.

Ernest D. Benavente, Francesc Coll, Nick Furnham, Ruth McNerney, Judith R. Glynn, Susana G. Campino, Arnab Pain, Fady R. Mohareb, Taane G. Clark

BMC Bioinform., 2015

2014

SVAMP: sequence variation analysis, maps and phylogeny.

Raeece Naeem, Lailatul Hidayah, Mark D. Preston, Taane G. Clark, Arnab Pain

Bioinform., 2014

estMOI: estimating multiplicity of infection using parasite deep sequencing data.

Samuel A. Assefa, Mark D. Preston, Susana G. Campino, Harold Ocholla, Colin J. Sutherland, Taane G. Clark

Bioinform., 2014

2012

VarB: a variation browsing and analysis tool for variants derived from next-generation sequencing data.

Mark D. Preston, Magnus Manske, Neil R. Horner, Samuel A. Assefa, Susana G. Campino, Sarah Auburn, Issaka Zongo, Jean-Bosco Ouedraogo, Francois Nosten, Timothy J. C. Anderson, Taane G. Clark

Bioinform., 2012

SpolPred: rapid and accurate prediction of <i>Mycobacterium tuberculosis</i> spoligotypes from short genomic sequences.

Francesc Coll, Kim Mallard, Mark D. Preston, Stephen D. Bentley, Julian Parkhill, Ruth McNerney, Nigel J. Martin, Taane G. Clark

Bioinform., 2012

2010

A Bayesian approach using covariance of single nucleotide polymorphism data to detect differences in linkage disequilibrium patterns between groups of individuals.

Taane G. Clark, Susana G. Campino, Elisa Anastasi, Sarah Auburn, Yik Y. Teo, Kerrin S. Small, Kirk A. Rockett, Dominic Kwiatkowski, Christopher C. Holmes

Bioinform., 2010

2009

SnoopCGH: software for visualizing comparative genomic hybridization data.

Jacob Almagro-Garcia, Magnus Manske, Celine Carret, Susana G. Campino, Sarah Auburn, Bronwyn L. MacInnis, Gareth Maslen, Arnab Pain, Christopher I. Newbold, Dominic Kwiatkowski, Taane G. Clark

Bioinform., 2009

2007

A genotype calling algorithm for the Illumina BeadArray platform.

Yik Y. Teo, Michael Inouye, Kerrin S. Small, Rhian Gwilliam, Panagiotis Deloukas, Dominic Kwiatkowski, Taane G. Clark

Bioinform., 2007