Svetlana A. Shabalina

According to our database, Svetlana A. Shabalina authored at least 10 papers between 1995 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Deciphering Structural Selective Constraints: A Comparative Evolutionary Analysis of RNA Hairpin Structures.

Alexey N. Spiridonov, Svetlana A. Shabalina

Proceedings of the Computational Methods in Systems Biology, 2024

2016

Optimization of signal-to-noise ratio for efficient microarray probe design.

Olga V. Matveeva, Yury D. Nechipurenko, Evgeniy Riabenko, Chikako Ragan, Nafisa N. Nazipova, Aleksey Y. Ogurtsov, Svetlana A. Shabalina

Bioinform., 2016

2014

The role of periodic mRNA secondary structure and RNA-RNA interactions in biological regulation and complexity.

Svetlana A. Shabalina, Aleksey Y. Ogurtsov, Anna Kashina, Nikolay A. Spiridonov

Proceedings of the 1st Workshop on Computational Methods for Structural RNAs (CMSR 2014), 2014

2013

The Vast, Conserved Mammalian lincRNome.

David Managadze, Alexander E. Lobkovsky, Yuri I. Wolf, Svetlana A. Shabalina, Igor B. Rogozin, Eugene V. Koonin

PLoS Comput. Biol., 2013

2006

Computational models with thermodynamic and composition features improve siRNA design.

Svetlana A. Shabalina, Alexey N. Spiridonov, Aleksey Y. Ogurtsov

BMC Bioinform., 2006

Analysis of internal loops within the RNA secondary structure in almost quadratic time.

Aleksey Y. Ogurtsov, Svetlana A. Shabalina, Alexey S. Kondrashov, Mikhail A. Roytberg

Bioinform., 2006

2004

Identification of regions in multiple sequence alignments thermodynamically suitable for targeting by consensus oligonucleotides: application to HIV genome.

Olga V. Matveeva, Brian T. Foley, Vladimir A. Nemtsov, Raymond F. Gesteland, Senya Matsufuji, John F. Atkins, Aleksey Y. Ogurtsov, Svetlana A. Shabalina

BMC Bioinform., 2004

2002

A hierarchical approach to aligning collinear regions of genomes.

Mikhail A. Roytberg, Aleksey Y. Ogurtsov, Svetlana A. Shabalina, Alexey S. Kondrashov

Bioinform., 2002

OWEN: aligning long collinear regions of genomes.

Aleksey Y. Ogurtsov, Mikhail A. Roytberg, Svetlana A. Shabalina, Alexey S. Kondrashov

Bioinform., 2002

1995

SAMSON: a software package for the biopolymer primary structure analysis.

Nafisa N. Nazipova, Svetlana A. Shabalina, Aleksey Y. Ogurtsov, Alexey S. Kondrashov, Mikhail A. Roytberg, G. V. Buryakov, S. E. Vernoslov

Comput. Appl. Biosci., 1995