Suzanne Sindi

Orcid: 0000-0003-2742-4332

According to our database1, Suzanne Sindi authored at least 35 papers between 2007 and 2024.

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Bibliography

2024
A new look at TFPI inhibition of factor X activation.
PLoS Comput. Biol., 2024

Sparse Negative Binomial Signal Recovery for Genomic Variant Prediction in Diploid Species.
Proceedings of the 46th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2024

2023
Inferring gene regulatory networks using transcriptional profiles as dynamical attractors.
PLoS Comput. Biol., 2023

Genetic Variant Detection Over Generations: Sparsity-Constrained Optimization Using Block-Coordinate Descent.
Proceedings of the IEEE International Symposium on Medical Measurements and Applications, 2023

2022
A structured model and likelihood approach to estimate yeast prion propagon replication rates and their asymmetric transmission.
PLoS Comput. Biol., 2022

Conservative finite volume method on deforming geometries: The case of protein aggregation in dividing yeast cells.
J. Comput. Phys., 2022

N-ACT: An Interpretable Deep Learning Model for Automatic Cell Type and Salient Gene Identification.
CoRR, 2022

<i>ACTIVA</i>: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective variational autoencoders.
Bioinform., 2022

2021
A Statistical Model of Word Rank Evolution.
CoRR, 2021

A field guide to cultivating computational biology.
CoRR, 2021

Novel structural variant genome detection in extended pedigrees through negative binomial optimization.
Proceedings of the 55th Asilomar Conference on Signals, Systems, and Computers, 2021

2020
A unifying model for the propagation of prion proteins in yeast brings insight into the [PSI+] prion.
PLoS Comput. Biol., 2020

Genomic Signal Processing for Variant Detection in Diploid Parent-Child Trios.
Proceedings of the 28th European Signal Processing Conference, 2020

Related Inference: A Supervised Learning Approach to Detect Signal Variation in Genome Data.
Proceedings of the 28th European Signal Processing Conference, 2020

A Neural Network Approach for Anomaly Detection in Genomic Signals.
Proceedings of the Asia-Pacific Signal and Information Processing Association Annual Summit and Conference, 2020

Detecting novel genomic structural variants through negative binomial optimization.
Proceedings of the 54th Asilomar Conference on Signals, Systems, and Computers, 2020

2019
Predicting Novel and Inherited Variants in Parent-Child Trios.
Proceedings of the IEEE International Symposium on Medical Measurements and Applications, 2019

Fine Tuning Sparsity Penalties to Improve Structural Variant Detection.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018
Negative Binomial Optimization for Biomedical Structural Variant Signal Reconstruction.
Proceedings of the 2018 IEEE International Conference on Acoustics, 2018

Structural Variant Prediction in Extended Pedigrees Through Sparse Negative Binomial Genome Signal Recovery.
Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2018

Detecting Novel Structural Variants In Genomes By Leveraging Parent-Child Relatedness.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017
Nonconvex regularization for sparse genomic variant signal detection.
Proceedings of the 2017 IEEE International Symposium on Medical Measurements and Applications, 2017

Sparse diploid spatial biosignal recovery for genomic variation detection.
Proceedings of the 2017 IEEE International Symposium on Medical Measurements and Applications, 2017

2016
On analytical and numerical approaches to division and label structured population models.
Appl. Math. Lett., 2016

Sparse genomic structural variant detection: Exploiting parent-child relatedness for signal recovery.
Proceedings of the IEEE Statistical Signal Processing Workshop, 2016

Sparse signal recovery methods for variant detection in next-generation sequencing data.
Proceedings of the 2016 IEEE International Conference on Acoustics, 2016

Constrained variant detection with SPaRC: Sparsity, parental relatedness, and coverage.
Proceedings of the 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016

2015
A study in nucleated polymerization models of protein aggregation.
Appl. Math. Lett., 2015

2014
A Crump-Mode-Jagers Branching Process Model of Prion Loss in Yeast.
J. Appl. Probab., 2014

Characterization of structural variants with single molecule and hybrid sequencing approaches.
Bioinform., 2014

2012
Identification of polymorphic inversions from genotypes.
BMC Bioinform., 2012

2011
Workshop: Characterization of structural variants with next generation DNA sequencing.
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011

2010
Identification and Frequency Estimation of Inversion Polymorphisms from Haplotype Data.
J. Comput. Biol., 2010

2009
A geometric approach for classification and comparison of structural variants.
Bioinform., 2009

2007
Handbook of Computational Molecular Biology: Edited by Srinivas Aluru.
Briefings Bioinform., 2007


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