Susumu Goto

According to our database, Susumu Goto authored at least 59 papers between 1992 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Expanding the concept of ID conversion in TogoID by introducing multi-semantic and label features.

Shuya Ikeda, Kiyoko F. Aoki-Kinoshita, Hirokazu Chiba, Susumu Goto, Masae Hosoda, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Tazro Ohta, Hiromasa Ono, Terue Takatsuki, Yasunori Yamamoto, Toshiaki Katayama

J. Biomed. Semant., December, 2025

2022

TogoID: an exploratory ID converter to bridge biological datasets.

Shuya Ikeda, Hiromasa Ono, Tazro Ohta, Hirokazu Chiba, Yuki Naito, Yuki Moriya, Shuichi Kawashima, Yasunori Yamamoto, Shinobu Okamoto, Susumu Goto, Toshiaki Katayama

Bioinform., 2022

2020

KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold.

Takuya Aramaki, Romain Blanc-Mathieu, Hisashi Endo, Koichi Ohkubo, Minoru Kanehisa, Susumu Goto, Hiroyuki Ogata

Bioinform., 2020

2019

The jPOST environment: an integrated proteomics data repository and database.

Yuki Moriya, Shin Kawano, Shujiro Okuda, Yu Watanabe, Masaki Matsumoto, Tomoyo Takami, Daiki Kobayashi, Yoshinori Yamanouchi, Norie Araki, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Mio Iwasaki, Naoyuki Sugiyama, Satoshi Tanaka, Susumu Goto, Yasushi Ishihama

Nucleic Acids Res., 2019

Integrated Growth Media Database by Standardizing Ingredient Information.

Shuichi Kawashima, Toshiaki Katayama, Yuki Moriya, Shinobu Okamoto, Yasunori Yamamoto, Susumu Goto

Proceedings of the 12th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2019

Transferring Reservoir Computing: Formulation and Application to Fluid Physics.

Masanobu Inubushi, Susumu Goto

Proceedings of the Artificial Neural Networks and Machine Learning - ICANN 2019 - 28th International Conference on Artificial Neural Networks, Munich, Germany, September 17-19, 2019, Proceedings, 2019

2018

Collective Motion of Repulsive Brownian Particles in Single-File Diffusion with and without Overtaking.

Takeshi Ooshida, Susumu Goto, Michio Otsuki

Entropy, 2018

2017

jPOSTrepo: an international standard data repository for proteomes.

Shujiro Okuda, Yu Watanabe, Yuki Moriya, Shin Kawano, Tadashi Yamamoto, Masaki Matsumoto, Tomoyo Takami, Daiki Kobayashi, Norie Araki, Akiyasu C. Yoshizawa, Tsuyoshi Tabata, Naoyuki Sugiyama, Susumu Goto, Yasushi Ishihama

Nucleic Acids Res., 2017

Discriminating the reaction types of plant type III polyketide synthases.

Yugo Shimizu, Hiroyuki Ogata, Susumu Goto

Bioinform., 2017

ViPTree: the viral proteomic tree server.

Yosuke Nishimura, Takashi Yoshida, Megumi Kuronishi, Hideya Uehara, Hiroyuki Ogata, Susumu Goto

Bioinform., 2017

2016

Identification of Enzyme Genes Using Chemical Structure Alignments of Substrate-Product Pairs.

Yuki Moriya, Takuji Yamada, Shujiro Okuda, Zenichi Nakagawa, Masaaki Kotera, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto

J. Chem. Inf. Model., 2016

2014

DINIES: drug-target interaction network inference engine based on supervised analysis.

Yoshihiro Yamanishi, Masaaki Kotera, Yuki Moriya, Ryusuke Sawada, Minoru Kanehisa, Susumu Goto

Nucleic Acids Res., 2014

Data, information, knowledge and principle: back to metabolism in KEGG.

Minoru Kanehisa, Susumu Goto, Yoko Sato, Masayuki Kawashima, Miho Furumichi, Mao Tanabe

Nucleic Acids Res., 2014

PIERO ontology for analysis of biochemical transformations: Effective implementation of reaction information in the IUBMB enzyme list.

Masaaki Kotera, Yosuke Nishimura, Zenichi Nakagawa, Ai Muto, Yuki Moriya, Shinobu Okamoto, Shuichi Kawashima, Toshiaki Katayama, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto

J. Bioinform. Comput. Biol., 2014

Pharmacoepidemiological characterization of drug-induced adverse reaction clusters towards understanding of their mechanisms.

Sayaka Mizutani, Yousuke Noro, Masaaki Kotera, Susumu Goto

Comput. Biol. Chem., 2014

Metabolome-scale prediction of intermediate compounds in multistep metabolic pathways with a recursive supervised approach.

Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Ai Muto, Yuki Moriya, Toshiaki Tokimatsu, Susumu Goto

Bioinform., 2014

2013

KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters.

Akihiro Nakaya, Toshiaki Katayama, Masumi Itoh, Kazushi Hiranuka, Shuichi Kawashima, Yuki Moriya, Shujiro Okuda, Michihiro Tanaka, Toshiaki Tokimatsu, Yoshihiro Yamanishi, Akiyasu C. Yoshizawa, Minoru Kanehisa, Susumu Goto

Nucleic Acids Res., 2013

Modular Architecture of Metabolic Pathways Revealed by Conserved Sequences of Reactions.

Ai Muto, Masaaki Kotera, Toshiaki Tokimatsu, Zenichi Nakagawa, Susumu Goto, Minoru Kanehisa

J. Chem. Inf. Model., 2013

KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics.

Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Yuki Moriya, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto

BMC Syst. Biol., 2013

Inferring protein domains associated with drug side effects based on drug-target interaction network.

Hiroaki Iwata, Sayaka Mizutani, Yasuo Tabei, Masaaki Kotera, Susumu Goto, Yoshihiro Yamanishi

BMC Syst. Biol., 2013

Supervised <i>de novo</i> reconstruction of metabolic pathways from metabolome-scale compound sets.

Masaaki Kotera, Yasuo Tabei, Yoshihiro Yamanishi, Toshiaki Tokimatsu, Susumu Goto

Bioinform., 2013

2012

GENIES: gene network inference engine based on supervised analysis.

Masaaki Kotera, Yoshihiro Yamanishi, Yuki Moriya, Minoru Kanehisa, Susumu Goto

Nucleic Acids Res., 2012

KEGG for integration and interpretation of large-scale molecular data sets.

Minoru Kanehisa, Susumu Goto, Yoko Sato, Miho Furumichi, Mao Tanabe

Nucleic Acids Res., 2012

Drug target prediction using adverse event report systems: a pharmacogenomic approach.

Masataka Takarabe, Masaaki Kotera, Yosuke Nishimura, Susumu Goto, Yoshihiro Yamanishi

Bioinform., 2012

Relating drug-protein interaction network with drug side effects.

Sayaka Mizutani, Edouard Pauwels, Véronique Stoven, Susumu Goto, Yoshihiro Yamanishi

Bioinform., 2012

2011

Network-Based Analysis and Characterization of Adverse Drug-Drug Interactions.

Masataka Takarabe, Daichi Shigemizu, Masaaki Kotera, Susumu Goto, Minoru Kanehisa

J. Chem. Inf. Model., 2011

MUCHA: multiple chemical alignment algorithm to identify building block substructures of orphan secondary metabolites.

Masaaki Kotera, Toshiaki Tokimatsu, Minoru Kanehisa, Susumu Goto

BMC Bioinform., 2011

2010

PathPred: an enzyme-catalyzed metabolic pathway prediction server.

Yuki Moriya, Daichi Shigemizu, Masahiro Hattori, Toshiaki Tokimatsu, Masaaki Kotera, Susumu Goto, Minoru Kanehisa

Nucleic Acids Res., 2010

KEGG for representation and analysis of molecular networks involving diseases and drugs.

Minoru Kanehisa, Susumu Goto, Miho Furumichi, Mao Tanabe, Mika Hirakawa

Nucleic Acids Res., 2010

SIMCOMP/SUBCOMP: chemical structure search servers for network analyses.

Masahiro Hattori, Nobuya Tanaka, Minoru Kanehisa, Susumu Goto

Nucleic Acids Res., 2010

Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework.

Yoshihiro Yamanishi, Masaaki Kotera, Minoru Kanehisa, Susumu Goto

Bioinform., 2010

2009

Extraction and Analysis of Chemical Modification Patterns in Drug Development.

Daichi Shigemizu, Michihiro Araki, Shujiro Okuda, Susumu Goto, Minoru Kanehisa

J. Chem. Inf. Model., 2009

E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs.

Yoshihiro Yamanishi, Masahiro Hattori, Masaaki Kotera, Susumu Goto, Minoru Kanehisa

Bioinform., 2009

GeneRegionScan: a Bioconductor package for probe-level analysis of specific, small regions of the genome.

Lasse Folkersen, Diego Diez, Craig E. Wheelock, Jesper Z. Haeggström, Susumu Goto, Per Eriksson, Anders Gabrielsen

Bioinform., 2009

2008

KEGG Atlas mapping for global analysis of metabolic pathways.

Shujiro Okuda, Takuji Yamada, Masami Hamajima, Masumi Itoh, Toshiaki Katayama, Peer Bork, Susumu Goto, Minoru Kanehisa

Nucleic Acids Res., 2008

KEGG for linking genomes to life and the environment.

Minoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi

Nucleic Acids Res., 2008

varDB: a pathogen-specific sequence database of protein families involved in antigenic variation.

C. Nelson Hayes, Diego Diez, Nicolas Joannin, Wataru Honda, Minoru Kanehisa, Mats Wahlgren, Craig E. Wheelock, Susumu Goto

Bioinform., 2008

2007

Systematic Analysis of Enzyme-Catalyzed Reaction Patterns and Prediction of Microbial Biodegradation Pathways.

Mina Oh, Takuji Yamada, Masahiro Hattori, Susumu Goto, Minoru Kanehisa

J. Chem. Inf. Model., 2007

Regulation of metabolic networks by small molecule metabolites.

Alex Gutteridge, Minoru Kanehisa, Susumu Goto

BMC Bioinform., 2007

Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach.

Masashi Fujita, Hisaaki Mihara, Susumu Goto, Nobuyoshi Esaki, Minoru Kanehisa

BMC Bioinform., 2007

The commonality of protein interaction networks determined in neurodegenerative disorders (NDDs).

Vachiranee Limviphuvadh, Seigo Tanaka, Susumu Goto, Kunihiro Ueda, Minoru Kanehisa

Bioinform., 2007

2006

ODB: a database of operons accumulating known operons across multiple genomes.

Shujiro Okuda, Toshiaki Katayama, Shuichi Kawashima, Susumu Goto, Minoru Kanehisa

Nucleic Acids Res., 2006

EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments.

Ali Masoudi-Nejad, Koichiro Tonomura, Shuichi Kawashima, Yuki Moriya, Masanori Suzuki, Masumi Itoh, Minoru Kanehisa, Takashi Endo, Susumu Goto

Nucleic Acids Res., 2006

From genomics to chemical genomics: new developments in KEGG.

Minoru Kanehisa, Susumu Goto, Masahiro Hattori, Kiyoko F. Aoki-Kinoshita, Masumi Itoh, Shuichi Kawashima, Toshiaki Katayama, Michihiro Araki, Mika Hirakawa

Nucleic Acids Res., 2006

Extraction of phylogenetic network modules from the metabolic network.

Takuji Yamada, Minoru Kanehisa, Susumu Goto

BMC Bioinform., 2006

2005

Prediction of glycan structures from gene expression data based on glycosyltransferase reactions.

Shin Kawano, Kosuke Hashimoto, Takashi Miyama, Susumu Goto, Minoru Kanehisa

Bioinform., 2005

Fast and accurate database homology search using upper bounds of local alignment scores.

Masumi Itoh, Susumu Goto, Tatsuya Akutsu, Minoru Kanehisa

Bioinform., 2005

2004

The KEGG resource for deciphering the genome.

Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Yasushi Okuno, Masahiro Hattori

Nucleic Acids Res., 2004

KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains.

Kiyoko F. Aoki, Atsuko Yamaguchi, Nobuhisa Ueda, Tatsuya Akutsu, Hiroshi Mamitsuka, Susumu Goto, Minoru Kanehisa

Nucleic Acids Res., 2004

2002

The KEGG databases at GenomeNet.

Minoru Kanehisa, Susumu Goto, Shuichi Kawashima, Akihiro Nakaya

Nucleic Acids Res., 2002

LIGAND: database of chemical compounds and reactions in biological pathways.

Susumu Goto, Yasushi Okuno, Masahiro Hattori, Takaaki Nishioka, Minoru Kanehisa

Nucleic Acids Res., 2002

2000

KEGG: Kyoto Encyclopedia of Genes and Genomes.

Minoru Kanehisa, Susumu Goto

Nucleic Acids Res., 2000

LIGAND: chemical database of enzyme reactions.

Susumu Goto, Takaaki Nishioka, Minoru Kanehisa

Nucleic Acids Res., 2000

1999

KEGG: Kyoto Encyclopedia of Genes and Genomes.

Hiroyuki Ogata, Susumu Goto, Kazushige Sato, Wataru Fujibuchi, Hidemasa Bono, Minoru Kanehisa

Nucleic Acids Res., 1999

LIGAND database for enzymes, compounds and reactions.

Susumu Goto, Takaaki Nishioka, Minoru Kanehisa

Nucleic Acids Res., 1999

1998

Metabolic Pathway Interface to Molecular Biology Databases.

Barry Zeeberg, Kevin Watanabe, Susumu Goto, Ross A. Overbeek, Larry Kerschberg, George Michaels

Proceedings of the 10th International Conference on Scientific and Statistical Database Management, 1998

1994

A Deductive Object-Oriented Language for Integrated Genome Databaser.

Susumu Goto, Norihiro Sakamoto, Toshihisa Takagi

Proceedings of the 27th Annual Hawaii International Conference on System Sciences (HICSS-27), 1994

1993

Object-Oriented Database with Rule-Based Query Interface for Genomic Computation.

Susumu Goto, Norihiro Sakamoto, Toshihisa Takagi

Proceedings of the 3rd International Conference on Database Systems for Advanced Applications (DASFAA), 1993

1992

Evaluation of a deductive database system for CAD applications.

Toshihisa Takagi, Takahiko Suzuki, Susumu Goto, Kazuo Ushijima

Syst. Comput. Jpn., 1992