Sunghwan Kim

According to our database, Sunghwan Kim authored at least 28 papers between 2011 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2024

PubChem synonym filtering process using crowdsourcing.

Sunghwan Kim, Bo Yu, Qingliang Li, Evan E. Bolton

J. Cheminformatics, December, 2024

2023

Database resources of the National Center for Biotechnology Information in 2023.

Eric W. Sayers, Evan E. Bolton, J. Rodney Brister, Kathi Canese, Jessica Chan, Donald C. Comeau, Catherine M. Farrell, Michael Feldgarden, Anna M. Fine, Kathryn Funk, Eneida Hatcher, Sivakumar Kannan, Christopher Kelly, Sunghwan Kim, William Klimke, Melissa J. Landrum, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Adriana J. Malheiro, Aron Marchler-Bauer, Terence D. Murphy, Lon Phan, Shashikant Pujar, Sanjida H. Rangwala, Valerie A. Schneider, Tony Tse, Jiyao Wang, Jian Ye, Barton W. Trawick, Kim D. Pruitt, Stephen T. Sherry

Nucleic Acids Res., January, 2023

PubChem 2023 update.

Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan E. Bolton

Nucleic Acids Res., January, 2023

Resource Description Framework (RDF) Modeling of Named Entity Co-occurrences Derived from Biomedical Literature in the PubChemRDF.

Qingliang Li, Sunghwan Kim, Leonid Zaslavsky, Tiejun Cheng, Bo Yu, Evan E. Bolton

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

2022

Database resources of the national center for biotechnology information.

Eric W. Sayers, Evan E. Bolton, J. Rodney Brister, Kathi Canese, Jessica Chan, Donald C. Comeau, Ryan Connor, Kathryn Funk, Chris Kelly, Sunghwan Kim, Tom Madej, Aron Marchler-Bauer, Christopher J. Lanczycki, Stacy Lathrop, Zhiyong Lu, Françoise Thibaud-Nissen, Terence D. Murphy, Lon Phan, Yuri Skripchenko, Tony Tse, Jiyao Wang, Rebecca Williams, Barton W. Trawick, Kim D. Pruitt, Stephen T. Sherry

Nucleic Acids Res., 2022

2021

Database resources of the National Center for Biotechnology Information.

Eric W. Sayers, Jeffrey Beck, Evan Bolton, Devon Bourexis, James R. Brister, Kathi Canese, Donald C. Comeau, Kathryn Funk, Sunghwan Kim, William Klimke, Aron Marchler-Bauer, Melissa J. Landrum, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Nuala A. O'Leary, Lon Phan, Sanjida H. Rangwala, Valerie A. Schneider, Yuri Skripchenko, Jiyao Wang, Jian Ye, Barton W. Trawick, Kim D. Pruitt, Stephen T. Sherry

Nucleic Acids Res., 2021

PubChem in 2021: new data content and improved web interfaces.

Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton

Nucleic Acids Res., 2021

Discovering and Summarizing Relationships Between Chemicals, Genes, Proteins, and Diseases in PubChem.

Leonid Zaslavsky, Tiejun Cheng, Asta Gindulyte, Siqian He, Sunghwan Kim, Qingliang Li, Paul A. Thiessen, Bo Yu, Evan Bolton

Frontiers Res. Metrics Anal., 2021

2020

Database resources of the National Center for Biotechnology Information.

Eric W. Sayers, Jeffrey Beck, J. Rodney Brister, Evan Bolton, Kathi Canese, Donald C. Comeau, Kathryn Funk, Anne Ketter, Sunghwan Kim, Avi Kimchi, Paul A. Kitts, Anatoliy Kuznetsov, Stacy Lathrop, Zhiyong Lu, Kelly M. McGarvey, Thomas L. Madden, Terence D. Murphy, Nuala A. O'Leary, Lon Phan, Valerie A. Schneider, Françoise Thibaud-Nissen, Barton W. Trawick, Kim D. Pruitt, James Ostell

Nucleic Acids Res., 2020

2019

Public Chemical Databases.

Sunghwan Kim

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

Database resources of the National Center for Biotechnology Information.

Eric W. Sayers, Richa Agarwala, Evan Bolton, J. Rodney Brister, Kathi Canese, Karen Clark, Ryan Connor, Nicolas Fiorini, Kathryn Funk, Timothy Hefferon, J. Bradley Holmes, Sunghwan Kim, Avi Kimchi, Paul A. Kitts, Stacy Lathrop, Zhiyong Lu, Thomas L. Madden, Aron Marchler-Bauer, Lon Phan, Valerie A. Schneider, Conrad L. Schoch, Kim D. Pruitt, James Ostell

Nucleic Acids Res., 2019

PubChem 2019 update: improved access to chemical data.

Sunghwan Kim, Jie Chen, Tiejun Cheng, Asta Gindulyte, Jia He, Siqian He, Qingliang Li, Benjamin A. Shoemaker, Paul A. Thiessen, Bo Yu, Leonid Zaslavsky, Jian Zhang, Evan Bolton

Nucleic Acids Res., 2019

PUG-View: programmatic access to chemical annotations integrated in PubChem.

Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Jian Zhang, Asta Gindulyte, Evan Bolton

J. Cheminformatics, 2019

2018

An update on PUG-REST: RESTful interface for programmatic access to PubChem.

Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Evan Bolton

Nucleic Acids Res., 2018

PubChem chemical structure standardization.

Volker Hähnke, Sunghwan Kim, Evan Bolton

J. Cheminformatics, 2018

2016

PubChem Substance and Compound databases.

Sunghwan Kim, Paul A. Thiessen, Evan Bolton, Jie Chen, Gang Fu, Asta Gindulyte, Lianyi Han, Jane He, Siqian He, Benjamin A. Shoemaker, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H. Bryant

Nucleic Acids Res., 2016

Similar compounds versus similar conformers: complementarity between PubChem 2-D and 3-D neighboring sets.

Sunghwan Kim, Evan Bolton, Stephen H. Bryant

J. Cheminformatics, 2016

Literature information in PubChem: associations between PubChem records and scientific articles.

Sunghwan Kim, Paul A. Thiessen, Tiejun Cheng, Bo Yu, Benjamin A. Shoemaker, Jiyao Wang, Evan Bolton, Yanli Wang, Stephen H. Bryant

J. Cheminformatics, 2016

2015

PUG-SOAP and PUG-REST: web services for programmatic access to chemical information in PubChem.

Sunghwan Kim, Paul A. Thiessen, Evan Bolton, Stephen H. Bryant

Nucleic Acids Res., 2015

PubChem structure-activity relationship (SAR) clusters.

Sunghwan Kim, Lianyi Han, Bo Yu, Volker Hähnke, Evan Bolton, Stephen H. Bryant

J. Cheminformatics, 2015

2013

PubChem3D: conformer ensemble accuracy.

Sunghwan Kim, Evan Bolton, Stephen H. Bryant

J. Cheminformatics, 2013

2012

Effects of multiple conformers per compound upon 3-D similarity search and bioassay data analysis.

Sunghwan Kim, Evan Bolton, Stephen H. Bryant

J. Cheminformatics, 2012

2011

PubChem3D: Biologically relevant 3-D similarity.

Sunghwan Kim, Evan Bolton, Stephen H. Bryant

J. Cheminformatics, 2011

PubChem3D: Shape compatibility filtering using molecular shape quadrupoles.

Sunghwan Kim, Evan Bolton, Stephen H. Bryant

J. Cheminformatics, 2011

PubChem3D: Similar conformers.

Evan Bolton, Sunghwan Kim, Stephen H. Bryant

J. Cheminformatics, 2011

PubChem3D: Diversity of shape.

Evan Bolton, Sunghwan Kim, Stephen H. Bryant

J. Cheminformatics, 2011

PubChem3D: Conformer generation.

Evan Bolton, Sunghwan Kim, Stephen H. Bryant

J. Cheminformatics, 2011

PubChem3D: a new resource for scientists.

Evan Bolton, Jie Chen, Sunghwan Kim, Lianyi Han, Siqian He, Wenyao Shi, Vahan Simonyan, Yan Sun, Paul A. Thiessen, Jiyao Wang, Bo Yu, Jian Zhang, Stephen H. Bryant

J. Cheminformatics, 2011