Sune Darkner

According to our database, Sune Darkner authored at least 72 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Locally orderless networks.

Jon Sporring, Peidi Xu, Jiahao Lu, François Lauze, Sune Darkner

CoRR, 2024

In Vivo Deep Learning Estimation of Diffusion Coefficients of Nanoparticles.

Julius B. Kirkegaard, Nikolay Kutuzov, Rasmus Netterstrøm, Sune Darkner, Martin Johannes Lauritzen, François Lauze

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

XFibrosis: Explicit Vessel-Fiber Modeling for Fibrosis Staging from Liver Pathology Images.

Chong Yin, Siqi Liu, Fei Lyu, Jiahao Lu, Sune Darkner, Vincent Wai-Sun Wong, Pong C. Yuen

Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2024

2023

Pseudo-Label Guided Image Synthesis for Semi-Supervised COVID-19 Pneumonia Infection Segmentation.

Fei Lyu, Mang Ye, Jonathan Frederik Carlsen, Kenny Erleben, Sune Darkner, Pong C. Yuen

IEEE Trans. Medical Imaging, March, 2023

Extremely weakly-supervised blood vessel segmentation with physiologically based synthesis and domain adaptation.

Peidi Xu, Olga V. Sosnovtseva, Charlotte Mehlin Sørensen, Kenny Erleben, Sune Darkner

CoRR, 2023

Localise to segment: crop to improve organ at risk segmentation accuracy.

Abraham George Smith, Denis Kutnár, Ivan Richter Vogelius, Sune Darkner, Jens Petersen

CoRR, 2023

Deep Learning-Assisted Localisation of Nanoparticles in synthetically generated two-photon microscopy images.

Rasmus Netterstrøm, Nikolay Kutuzov, Sune Darkner, Maurits Jørring Pallesen, Martin Johannes Lauritzen, Kenny Erleben, François Lauze

CoRR, 2023

A Hybrid Approach to Full-Scale Reconstruction of Renal Arterial Network.

Peidi Xu, Niels-Henrik Holstein-Rathlou, Stinne Byrholdt Søgaard, Carsten Gundlach, Charlotte Mehlin Sørensen, Kenny Erleben, Olga V. Sosnovtseva, Sune Darkner

CoRR, 2023

Deep-Learning-Based Segmentation of Individual Tooth and Bone With Periodontal Ligament Interface Details for Simulation Purposes.

Peidi Xu, Torkan Gholamalizadeh, Faezeh Moshfeghifar, Sune Darkner, Kenny Erleben

IEEE Access, 2023

Extremely Weakly-Supervised Blood Vessel Segmentation with Physiologically Based Synthesis and Domain Adaptation.

Peidi Xu, Blaire Lee, Olga V. Sosnovtseva, Charlotte Mehlin Sørensen, Kenny Erleben, Sune Darkner

Proceedings of the Medical Image Learning with Limited and Noisy Data, 2023

cRedAnno+: Annotation Exploitation In Self-Explanatory Lung Nodule Diagnosis.

Jiahao Lu, Chong Yin, Kenny Erleben, Michael Bachmann Nielsen, Sune Darkner

Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

2022

Information-Theoretic Registration with Explicit Reorientation of Diffusion-Weighted Images.

Henrik G. Jensen, François Lauze, Sune Darkner

J. Math. Imaging Vis., 2022

An algebra for local histograms.

Jon Sporring, Sune Darkner

Frontiers Comput. Sci., 2022

Reconstructing Binary Signals from Local Histograms.

Jon Sporring, Sune Darkner

Entropy, 2022

A multi-patient analysis of the center of rotation trajectories using finite element models of the human mandible.

Torkan Gholamalizadeh, Sune Darkner, Peter Lempel Søndergaard, Kenny Erleben

CoRR, 2022

A direct geometry processing cartilage generation method using segmented bone models from datasets with poor cartilage visibility.

Faezeh Moshfeghifar, Max Kragballe Nielsen, José D. Tascón-Vidarte, Sune Darkner, Kenny Erleben

CoRR, 2022

LibHip: An open-access hip joint model repository suitable for finite element method simulation.

Faezeh Moshfeghifar, Torkan Gholamalizadeh, Zachary Ferguson, Teseo Schneider, Michael Bachmann Nielsen, Daniele Panozzo, Sune Darkner, Kenny Erleben

Comput. Methods Programs Biomed., 2022

Open-Full-Jaw: An open-access dataset and pipeline for finite element models of human jaw.

Torkan Gholamalizadeh, Faezeh Moshfeghifar, Zachary Ferguson, Teseo Schneider, Daniele Panozzo, Sune Darkner, Masrour Makaremi, François Chan, Peter Lempel Søndergaard, Kenny Erleben

Comput. Methods Programs Biomed., 2022

Auto-segmentation of Hip Joints Using MultiPlanar UNet with Transfer Learning.

Peidi Xu, Faezeh Moshfeghifar, Torkan Gholamalizadeh, Michael Bachmann Nielsen, Kenny Erleben, Sune Darkner

Proceedings of the Medical Image Learning with Limited and Noisy Data, 2022

Reducing Annotation Need in Self-explanatory Models for Lung Nodule Diagnosis.

Jiahao Lu, Chong Yin, Oswin Krause, Kenny Erleben, Michael Bachmann Nielsen, Sune Darkner

Proceedings of the Interpretability of Machine Intelligence in Medical Image Computing, 2022

Fast Vortex Particle Method for Fluid-Character Interaction.

Asger Meldgaard, Sune Darkner, Kenny Erleben

Proceedings of the 48th Graphics Interface Conference, 2022

Group Convolutional Neural Networks for DWI Segmentation.

Renfei Liu, François Lauze, Erik J. Bekkers, Kenny Erleben, Sune Darkner

Proceedings of the Geometric Deep Learning in Medical Image Analysis, 2022

Revisiting Transformer-based Models for Long Document Classification.

Xiang Dai, Ilias Chalkidis, Sune Darkner, Desmond Elliott

Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2022, 2022

2021

Global Position Prediction for Interactive Motion Capture.

Paul Schreiner, Maksym Perepichka, Hayden Lewis, Sune Darkner, Paul G. Kry, Kenny Erleben, Victor B. Zordan

Proc. ACM Comput. Graph. Interact. Tech., 2021

U-Sleep: resilient high-frequency sleep staging.

Mathias Perslev, Sune Darkner, Lykke Kempfner, Miki Nikolic, Poul Jørgen Jennum, Christian Igel

npj Digit. Medicine, 2021

First Order Locally Orderless Registration.

Sune Darkner, Jose D. Tascon, François Lauze

CoRR, 2021

RootPainter3D: Interactive-machine-learning enables rapid and accurate contouring for radiotherapy.

Abraham George Smith, Jens Petersen, Cynthia Terrones-Campos, Anne Kiil Berthelsen, Nora Jarrett Forbes, Sune Darkner, Lena Specht, Ivan Richter Vogelius

CoRR, 2021

Contact modeling from images using cut finite element solvers.

Susanne Claus, Pierre Kerfriden, Faezeh Moshfeghifar, Sune Darkner, Kenny Erleben, Christian Wong

Adv. Model. Simul. Eng. Sci., 2021

First Order Locally Orderless Registration.

Sune Darkner, José D. Tascón-Vidarte, François Lauze

Proceedings of the Scale Space and Variational Methods in Computer Vision, 2021

Cine-MRI Simulation to Evaluate Tumor Tracking.

José D. Tascón-Vidarte, Isak Wahlstedt, Julien Jomier, Kenny Erleben, Ivan R. Vogelius, Sune Darkner

Proceedings of the Simulation and Synthesis in Medical Imaging, 2021

Bundle Geodesic Convolutional Neural Network for DWI Segmentation from Single Scan Learning.

Renfei Liu, François Lauze, Kenny Erleben, Sune Darkner

Proceedings of the Computational Diffusion MRI - 12th International Workshop, 2021

2020

Mandibular Teeth Movement Variations in Tipping Scenario: A Finite Element Study on Several Patients.

Torkan Gholamalizadeh, Sune Darkner, Paolo Maria Cattaneo, Peter Lempel Søndergaard, Kenny Erleben

CoRR, 2020

2019

U-Time: A Fully Convolutional Network for Time Series Segmentation Applied to Sleep Staging.

Mathias Perslev, Michael Hejselbak Jensen, Sune Darkner, Poul Jørgen Jennum, Christian Igel

Proceedings of the Advances in Neural Information Processing Systems 32: Annual Conference on Neural Information Processing Systems 2019, 2019

TopAwaRe: Topology-Aware Registration.

Rune Kok Nielsen, Sune Darkner, Aasa Feragen

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Data Driven Inverse Kinematics of Soft Robots using Local Models.

Fredrik Holsten, Morten Pol Engell-Nørregård, Sune Darkner, Kenny Erleben

Proceedings of the International Conference on Robotics and Automation, 2019

2018

Collocation for Diffeomorphic Deformations in Medical Image Registration.

Sune Darkner, Akshay Pai, Matthew G. Liptrot, Jon Sporring

IEEE Trans. Pattern Anal. Mach. Intell., 2018

An Average of the Human Ear Canal: Recovering Acoustical Properties via Shape Analysis.

Sune Darkner, Stefan Sommer, Andreas Schuhmacher, Henrik Ingerslev Anders O. Baandrup, Carsten Thomsen, Søren Jønsson

CoRR, 2018

Local Models for Data Driven Inverse Kinematics of Soft Robots.

Fredrik Holsten, Sune Darkner, Morten Pol Engell-Nørregård, Kenny Erleben

Proceedings of the Poster Proceedings of the ACM SIGGRAPH/Eurographics Symposium on Computer Animation, 2018

2016

Kernel Bundle Diffeomorphic Image Registration Using Stationary Velocity Fields and Wendland Basis Functions.

Akshay Pai, Stefan Sommer, Lauge Sørensen, Sune Darkner, Jon Sporring, Mads Nielsen

IEEE Trans. Medical Imaging, 2016

Combining the boundary shift integral and tensor-based morphometry for brain atrophy estimation.

Mateusz Michalkiewicz, Akshay Pai, Kelvin K. Leung, Stefan Sommer, Sune Darkner, Lauge Sørensen, Jon Sporring, Mads Nielsen

Proceedings of the Medical Imaging 2016: Image Processing, 2016

Finding significantly connected voxels based on histograms of connection strengths.

Niklas Kasenburg, Morten Vester Pedersen, Sune Darkner

Proceedings of the Medical Imaging 2016: Image Processing, 2016

A Statistical Model for Simultaneous Template Estimation, Bias Correction, and Registration of 3D Brain Images.

Akshay Pai, Stefan Sommer, Lars Lau Rakêt, Line Kühnel, Sune Darkner, Lauge Sørensen, Mads Nielsen

Proceedings of the Medical Computer Vision and Bayesian and Graphical Models for Biomedical Imaging, 2016

Structural parcellation of the thalamus using shortest-path tractography.

Niklas Kasenburg, Sune Darkner, Ute Hahn, Matthew G. Liptrot, Aasa Feragen

Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

2015

Image registration using stationary velocity fields parameterized by norm-minimizing Wendland kernel.

Akshay Pai, Stefan Sommer, Lauge Sørensen, Sune Darkner, Jon Sporring, Mads Nielsen

Proceedings of the Medical Imaging 2015: Image Processing, 2015

Locally Orderless Registration for Diffusion Weighted Images.

Henrik G. Jensen, François Lauze, Mads Nielsen, Sune Darkner

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Diffeomorphic image registration with automatic time-step adjustment.

Akshay Pai, Stefan Klein, Stefan Sommer, Sune Darkner, Jon Sporring, Mads Nielsen

Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

2014

Stepwise Inverse Consistent Euler's Scheme for Diffeomorphic Image Registration.

Akshay Pai, Stefan Sommer, Sune Darkner, Lauge Sørensen, Jon Sporring, Mads Nielsen

Proceedings of the Biomedical Image Registration - 6th International Workshop, 2014

Automatic FDG-PET-based tumor and metastatic lymph node segmentation in cervical cancer.

Dídac R. Arbonès, Henrik G. Jensen, Annika Loft, Per Munck af Rosenschöld, Anders E. Hansen, Christian Igel, Sune Darkner

Proceedings of the Medical Imaging 2014: Image Processing, 2014

Estimating the thickness of ultra thin sections for electron microscopy by image statistics.

Jon Sporring, Mahdieh Khanmohammadi, Sune Darkner, Nicoletta Nava, Jens Rondel Nyengaard, Eva Bjorn Wedel Jensen

Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

2013

Higher-Order Momentum Distributions and Locally Affine LDDMM Registration.

Stefan Sommer, Mads Nielsen, Sune Darkner, Xavier Pennec

SIAM J. Imaging Sci., 2013

Locally Orderless Registration.

Sune Darkner, Jon Sporring

IEEE Trans. Pattern Anal. Mach. Intell., 2013

Automatic measurement of wrist synovitis from contrast-enhanced MRI: a registration-centered approach.

Peter Mysling, Sune Darkner, Jon Sporring, Erik Dam, Martin Lillholm

Proceedings of the Medical Imaging 2013: Image Processing, 2013

Cube propagation for focal brain atrophy estimation.

Akshay Pai, Lauge Sørensen, Sune Darkner, Peter Mysling, Dan R. Jørgensen, Erik B. Dam, Martin Lillholm, Joonmi Oh, Gennan Chen, Joyce Suhy, Jon Sporring, Mads Nielsen

Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

2012

Data Driven Constraints for the SVM.

Sune Darkner, Line Harder Clemmensen

Proceedings of the Machine Learning in Medical Imaging - Third International Workshop, 2012

Jet-Based Local Image Descriptors.

Anders Boesen Lindbo Larsen, Sune Darkner, Anders Lindbjerg Dahl, Kim Steenstrup Pedersen

Proceedings of the Computer Vision - ECCV 2012, 2012

2011

A hyper elasticity method for interactive virtual design of hearing aids - A parallel method for general non-linear hyper elasticity modeling.

Sune Darkner, Kenny Erleben

Vis. Comput., 2011

Higher Order Kernels and Locally Affine LDDMM Registration

Stefan Sommer, Mads Nielsen, Sune Darkner, Xavier Pennec

CoRR, 2011

Efficient Hyperelastic Regularization for Registration.

Sune Darkner, Michael Sass Hansen, Rasmus Larsen, Mads Fogtmann Hansen

Proceedings of the Image Analysis - 17th Scandinavian Conference, 2011

Generalized Partial Volume: An Inferior Density Estimator to Parzen Windows for Normalized Mutual Information.

Sune Darkner, Jon Sporring

Proceedings of the Information Processing in Medical Imaging, 2011

2010

Local Segmentation by Large Scale Hypothesis Testing - Segmentation as Outlier Detection.

Sune Darkner, Anders Bjorholm Dahl, Rasmus Larsen, Arnold Skimminge, Ellen Garde, Gunhild Waldemar

Proceedings of the VISAPP 2010 - Proceedings of the Fifth International Conference on Computer Vision Theory and Applications, Angers, France, May 17-21, 2010, 2010

Registration-based interpolation applied to cardiac MRI.

Hildur Ólafsdóttir, Henrik Pedersen, Michael Sass Hansen, Mark Lyksborg, Mads Fogtmann Hansen, Sune Darkner, Rasmus Larsen

Proceedings of the Medical Imaging 2010: Image Processing, 2010

2008

Non-rigid registration of 2D manifolds in 3D Euclidian space.

Sune Darkner, Martin Vester-Christensen, Rasmus R. Paulsen, Rasmus Larsen

Proceedings of the Medical Imaging 2008: Image Processing, 2008

Robust registration for change detection.

Sune Darkner, Dan Witzner Hansen, Rasmus R. Paulsen, Rasmus Larsen

Proceedings of the Medical Imaging 2008: Image Processing, 2008

Analysis of Surfaces Using Constrained Regression Models.

Sune Darkner, Mert R. Sabuncu, Polina Golland, Rasmus R. Paulsen, Rasmus Larsen

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Estimation of shape model parameters for 3D surfaces.

Søren G. H. Erbou, Sune Darkner, Jurgen Fripp, Sébastien Ourselin, Bjarne K. Ersbøll

Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

2007

Texture enhanced appearance models.

Rasmus Larsen, Mikkel B. Stegmann, Sune Darkner, Søren Forchhammer, Timothy F. Cootes, Bjarne K. Ersbøll

Comput. Vis. Image Underst., 2007

Accelerated 3D image registration.

Martin Vester-Christensen, Søren G. H. Erbou, Sune Darkner, Rasmus Larsen

Proceedings of the Medical Imaging 2007: Image Processing, 2007

Evaluating a method for automated rigid registration.

Sune Darkner, Martin Vester-Christensen, Rasmus Larsen, Rasmus R. Paulsen

Proceedings of the Medical Imaging 2007: Image Processing, 2007

Analysis of Deformation of the Human Ear and Canal Caused by Mandibular Movement.

Sune Darkner, Rasmus Larsen, Rasmus R. Paulsen

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29, 2007

An Active Illumination and Appearance (AIA) Model for Face Alignment.

Fatih Kahraman, Muhittin Gökmen, Sune Darkner, Rasmus Larsen

Proceedings of the 2007 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2007), 2007

2004

Wedgelet Enhanced Appearance Models.

Sune Darkner, Rasmus Larsen, Mikkel B. Stegmann, Bjarne K. Ersbøll

Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition Workshops, 2004

2003

Some Issues of Biological Shape Modelling with Applications.

Rasmus Larsen, Klaus Baggesen Hilger, Karl Skoglund, Sune Darkner, Rasmus R. Paulsen, Mikkel B. Stegmann, Brian Lading, Hans Henrik Thodberg, Hrafnkell Eiriksson

Proceedings of the Image Analysis, 13th Scandinavian Conference, 2003