Sumit Madan

According to our database, Sumit Madan authored at least 20 papers between 2012 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2024

Transformer models in biomedicine.

Sumit Madan, Manuel Lentzen, Johannes Brandt, Daniel Rueckert, Martin Hofmann-Apitius, Holger Fröhlich

BMC Medical Informatics Decis. Mak., December, 2024

Dataset of miRNA-disease relations extracted from textual data using transformer-based neural networks.

Sumit Madan, Lisa Kühnel, Holger Fröhlich, Martin Hofmann-Apitius, Juliane Fluck

Database J. Biol. Databases Curation, January, 2024

2023

A Transformer-Based Model Trained on Large Scale Claims Data for Prediction of Severe COVID-19 Disease Progression.

Manuel Lentzen, Thomas Linden, Sai Veeranki, Sumit Madan, Diether Kramer, Werner Leodolter, Holger Fröhlich

IEEE J. Biomed. Health Informatics, September, 2023

2022

Accurate prediction of virus-host protein-protein interactions via a Siamese neural network using deep protein sequence embeddings.

Sumit Madan, Victoria Demina, Marcus Stapf, Oliver Ernst, Holger Fröhlich

Patterns, 2022

Deep Learning-based detection of psychiatric attributes from German mental health records.

Sumit Madan, Fabian Julius Zimmer, Helena Balabin, Sebastian Schaaf, Holger Fröhlich, Juliane Fluck, Irene Neuner, Klaus Mathiak, Martin Hofmann-Apitius, Pegah Sarkheil

Int. J. Medical Informatics, 2022

2021

The COVID-19 Ontology.

Astghik Sargsyan, Alpha Tom Kodamullil, Shounak Baksi, Johannes Darms, Sumit Madan, Stephan Gebel, Oliver Keminer, Geena Mariya Jose, Helena Balabin, Lauren Nicole Delong, Manfred Kohler, Marc Jacobs, Martin Hofmann-Apitius

Bioinform., 2021

COVID-19 preVIEW: Semantic Search to Explore COVID-19 Research Preprints.

Lisa Langnickel, Roman Baum, Johannes Darms, Sumit Madan, Juliane Fluck

Proceedings of the Public Health and Informatics, 2021

2020

SEAweb: the small RNA Expression Atlas web application.

Raza-Ur Rahman, Anna-Maria Liebhoff, Vikas Bansal, Maksims Fiosins, Ashish Rajput, Abdul Sattar, Daniel Sumner Magruder, Sumit Madan, Ting Sun, Abhivyakti Gautam, Sven Heins, Timur Liwinski, Jörn Bethune, Claudia Trenkwalder, Juliane Fluck, Brit Mollenhauer, Stefan Bonn

Nucleic Acids Res., 2020

Proposal of an Architecture for Terminology Management in a Research Project.

Sara Mora, Sumit Madan, Stephan Gebel, Mauro Giacomini

Proceedings of the Digital Personalized Health and Medicine - Proceedings of MIE 2020, Medical Informatics Europe, Geneva, Switzerland, April 28, 2020

CTO: A Community-Based Clinical Trial Ontology and Its Applications in PubChemRDF and SCAIView.

Asiyah Yu Lin, Stephan Gebel, Qingliang Leon Li, Sumit Madan, Johannes Darms, Evan Bolton, Barry Smith, Martin Hofmann-Apitius, Yongqun Oliver He, Alpha Tom Kodamullil

Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS) and part of the Bolzano Summer of Knowledge (BoSK 2020), 2020

2019

The extraction of complex relationships and their conversion to biological expression language (BEL) overview of the BioCreative VI (2017) BEL track.

Sumit Madan, Justyna Szostak, Ravikumar Komandur Elayavilli, Richard Tzong-Han Tsai, Mehdi Ali, Longhua Qian, Majid Rastegar-Mojarad, Julia Hoeng, Juliane Fluck

Database J. Biol. Databases Curation, 2019

2018

A semantic data integration methodology for translational neurodegenerative disease research.

Sumit Madan, Maksims Fiosins, Stefan Bonn, Juliane Fluck

Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, 2018

SCAIView - A Semantic Search Engine for Biomedical Research Utilizing a Microservice Architecture.

Jens Dörpinghaus, Jürgen Klein, Johannes Darms, Sumit Madan, Marc Jacobs

Proceedings of the Posters and Demos Track of the 14th International Conference on Semantic Systems co-located with the 14th International Conference on Semantic Systems (SEMANTiCS 2018), 2018

2016

Overview of the interactive task in BioCreative V.

Qinghua Wang, Shabbir Syed-Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios V. Gkoutos, Afroza Khanam Irin, Lars Juhl Jensen, Silvia Jimenez, Toni Rose Jue, Ingrid M. Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew E. Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel M. Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole A. Vasilevsky, Xiaodong Wang, Andrew Chatr-aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna R. McEntyre, Sandra E. Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary L. Schaeffer, Cathy H. Wu, Lynette Hirschman, Cecilia N. Arighi

Database J. Biol. Databases Curation, 2016

BioCreative V track 4: a shared task for the extraction of causal network information using the Biological Expression Language.

Fabio Rinaldi, Tilia Renate Ellendorff, Sumit Madan, Simon Clematide, Adrian Van der Lek, Heinz-Theodor Mevissen, Juliane Fluck

Database J. Biol. Databases Curation, 2016

The BEL information extraction workflow (BELIEF): evaluation in the BioCreative V BEL and IAT track.

Sumit Madan, Sven Hodapp, Philipp Senger, Sam Ansari, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch, Juliane Fluck

Database J. Biol. Databases Curation, 2016

Training and evaluation corpora for the extraction of causal relationships encoded in biological expression language (BEL).

Juliane Fluck, Sumit Madan, Sam Ansari, Alpha Tom Kodamullil, Reagon Karki, Majid Rastegar-Mojarad, Natalie L. Catlett, William Hayes, Justyna Szostak, Julia Hoeng, Manuel C. Peitsch

Database J. Biol. Databases Curation, 2016

2015

Construction of biological networks from unstructured information based on a semi-automated curation workflow.

Justyna Szostak, Sam Ansari, Sumit Madan, Juliane Fluck, Marja Talikka, Anita Iskandar, Hector De Leon, Martin Hofmann-Apitius, Manuel C. Peitsch, Julia Hoeng

Database J. Biol. Databases Curation, 2015

2013

BEL Networks Derived from Qualitative Translations of BioNLP Shared Task Annotations.

Juliane Fluck, Alexander Klenner, Sumit Madan, Sam Ansari, Tamara Bobic, Julia Hoeng, Martin Hofmann-Apitius, Manuel C. Peitsch

Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, 2013

2012

Online Communities Support Policy-Making: The Need for Data Analysis.

Roman Klinger, Philipp Senger, Sumit Madan, Michal Jacovi

Proceedings of the Electronic Participation - 4th IFIP WG 8.5 International Conference, 2012