Steven J. Hallam

According to our database, Steven J. Hallam authored at least 18 papers between 2013 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

Aggregating Statistically Correlated Metabolic Pathways Into Groups to Improve Prediction Performance.

Abdur Rahman Mohd Abul Basher, Steven J. Hallam

Proceedings of the 15th International Joint Conference on Biomedical Engineering Systems and Technologies, 2022

2021

An integrated, modular approach to data science education in microbiology.

Kimberly A. Dill-McFarland, Stephan G. König, Florent Mazel, David C. Oliver, Lisa M. McEwen, Kris Y. Hong, Steven J. Hallam

PLoS Comput. Biol., 2021

Metabolic Pathway Prediction Using Non-Negative Matrix Factorization with Improved Precision.

Abdur Rahman Mohd Abul Basher, Ryan J. McLaughlin, Steven J. Hallam

J. Comput. Biol., 2021

Hive Panel Explorer: an interactive network visualization tool.

Sarah E. I. Perez, Aria S. Hahn, Martin Krzywinski, Steven J. Hallam

Bioinform., 2021

Leveraging heterogeneous network embedding for metabolic pathway prediction.

Abdur Rahman Mohd Abul Basher, Steven J. Hallam

Bioinform., 2021

Relabeling Metabolic Pathway Data with Groups to Improve Prediction Outcomes.

Abdur Rahman Mohd Abul Basher, Steven J. Hallam

Proceedings of the Computational Advances in Bio and Medical Sciences: 11th International Conference, 2021

2020

Metabolic pathway inference using multi-label classification with rich pathway features.

Abdur Rahman Mohd Abul Basher, Ryan J. McLaughlin, Steven J. Hallam

PLoS Comput. Biol., 2020

TreeSAPP: the Tree-based Sensitive and Accurate Phylogenetic Profiler.

Connor Morgan-Lang, Ryan J. McLaughlin, Zachary Armstrong, Grace Zhang, Kevin Chan, Steven J. Hallam

Bioinform., 2020

2017

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.

David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides

Nucleic Acids Res., 2017

2016

LCA*: an entropy-based measure for taxonomic assignment within assembled metagenomes.

Niels W. Hanson, Kishori M. Konwar, Steven J. Hallam

Bioinform., 2016

FAST: Fast annotation with synchronized threads.

Dongjae Kim, Aria S. Hahn, Niels W. Hanson, Kishori M. Konwar, Steven J. Hallam

Proceedings of the 2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2016

2015

MetaPathways v2.5: quantitative functional, taxonomic and usability improvements.

Kishori M. Konwar, Niels W. Hanson, Maya P. Bhatia, Dongjae Kim, Shang-Ju Wu, Aria S. Hahn, Connor Morgan-Lang, Hiu Kan Cheung, Steven J. Hallam

Bioinform., 2015

FragGeneScan-plus for scalable high-throughput short-read open reading frame prediction.

Dongjae Kim, Aria S. Hahn, Shang-Ju Wu, Niels W. Hanson, Kishori M. Konwar, Steven J. Hallam

Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2015

Assembly independent functional annotation of short-read data using SOFA: Short-ORF functional annotation.

Aria S. Hahn, Niels W. Hanson, Dongjae Kim, Kishori M. Konwar, Steven J. Hallam

Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2015

2014

MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds.

Niels W. Hanson, Kishori M. Konwar, Shang-Ju Wu, Steven J. Hallam

Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2014

2013

Expanding the boundaries of local similarity analysis.

W. Evan Durno, Niels W. Hanson, Kishori M. Konwar, Steven J. Hallam

BMC Genom., 2013

MetaPathways: a modular pipeline for constructing pathway/genome databases from environmental sequence information.

Kishori M. Konwar, Niels W. Hanson, Antoine P. Pagé, Steven J. Hallam

BMC Bioinform., 2013

Scalable heuristics for clustering biological graphs.

Inna Rytsareva, Ananth Kalyanaraman, Kishori M. Konwar, Steven J. Hallam

Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013