Steven A. Hofmeyr

According to our database, Steven A. Hofmeyr authored at least 51 papers between 1996 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Exabiome: Advancing Microbial Science through Exascale Computing.

Steven A. Hofmeyr, Aydin Buluç, Robert Riley, Rob Egan, Oguz Selvitopi, Leonid Oliker, Katherine A. Yelick, Migun Shakya, Brett Youtsey, Ariful Azad

Comput. Sci. Eng., 2024

SIMCoV-GPU: Accelerating an Agent-Based Model for Exascale.

Kirtus G. Leyba, Steven A. Hofmeyr, Stephanie Forrest, Judy L. Cannon, Melanie E. Moses

Proceedings of the 33rd International Symposium on High-Performance Parallel and Distributed Computing, 2024

2023

High-Performance Filters for GPUs.

Hunter McCoy, Steven A. Hofmeyr, Katherine A. Yelick, Prashant Pandey

Proceedings of the 28th ACM SIGPLAN Annual Symposium on Principles and Practice of Parallel Programming, 2023

Designing Efficient SIMD Kernels for High Performance Sequence Alignment.

Doru-Thom Popovici, Muaaz Gul Awan, Giulia Guidi, Rob Egan, Steven A. Hofmeyr, Leonid Oliker, Katherine A. Yelick

Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2023

Singleton Sieving: Overcoming the Memory/Speed Trade-Off in Exascale <i>κ</i>-mer Analysis.

Hunter McCoy, Steven A. Hofmeyr, Katherine A. Yelick, Prashant Pandey

Proceedings of the SIAM Conference on Applied and Computational Discrete Algorithms, 2023

2022

Understanding the Power of Evolutionary Computation for GPU Code Optimization.

Jhe-Yu Liou, Muaaz Awan, Steven A. Hofmeyr, Stephanie Forrest, Carole-Jean Wu

Proceedings of the IEEE International Symposium on Workload Characterization, 2022

2021

Spatially distributed infection increases viral load in a computational model of SARS-CoV-2 lung infection.

Melanie E. Moses, Steven A. Hofmeyr, Judy L. Cannon, Akil Andrews, Rebekah Gridley, Monica Hinga, Kirtus G. Leyba, Abigail Pribisova, Vanessa Surjadidjaja, Humayra Tasnim, Stephanie Forrest

PLoS Comput. Biol., 2021

Accelerating large scale <i>de novo</i> metagenome assembly using GPUs.

Muaaz Gul Awan, Steven A. Hofmeyr, Rob Egan, Nan Ding, Aydin Buluç, Jack Deslippe, Leonid Oliker, Katherine A. Yelick

Proceedings of the International Conference for High Performance Computing, 2021

2020

The Parallelism Motifs of Genomic Data Analysis.

Katherine A. Yelick, Aydin Buluç, Muaaz G. Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven A. Hofmeyr, Oguz Selvitopi, Cristina Teodoropol, Leonid Oliker

CoRR, 2020

ADEPT: a domain independent sequence alignment strategy for gpu architectures.

Muaaz G. Awan, Jack Deslippe, Aydin Buluç, Oguz Selvitopi, Steven A. Hofmeyr, Leonid Oliker, Katherine A. Yelick

BMC Bioinform., 2020

LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment.

Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick

Proceedings of the 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS), 2020

GPU accelerated partial order multiple sequence alignment for long reads self-correction.

Francesco Peverelli, Lorenzo Di Tucci, Marco D. Santambrogio, Nan Ding, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick

Proceedings of the 2020 IEEE International Parallel and Distributed Processing Symposium Workshops, 2020

2019

UPC++: A High-Performance Communication Framework for Asynchronous Computation.

John Bachan, Scott B. Baden, Steven A. Hofmeyr, Mathias Jacquelin, Amir Kamil, Dan Bonachea, Paul H. Hargrove, Hadia Ahmed

Proceedings of the 2019 IEEE International Parallel and Distributed Processing Symposium, 2019

2018

Enabling power-awareness for the Xen hypervisor.

Matteo Ferroni, Juan A. Colmenares, Steven A. Hofmeyr, John Kubiatowicz, Marco D. Santambrogio

SIGBED Rev., 2018

Extreme scale de novo metagenome assembly.

Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt, Aydin Buluç, Leonid Oliker, Katherine A. Yelick

Proceedings of the International Conference for High Performance Computing, 2018

A Parallel, Energy Efficient Hardware Architecture for the merAligner on FPGA Using Chisel HCL.

Lorenzo Di Tucci, Davide Conficconi, Alessandro Comodi, Steven A. Hofmeyr, David Donofrio, Marco D. Santambrogio

Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium Workshops, 2018

Energy-efficient Application Resource Scheduling using Machine Learning Classifiers.

Connor Imes, Steven A. Hofmeyr, Henry Hoffmann

Proceedings of the 47th International Conference on Parallel Processing, 2018

2017

Power Consumption Models for Multi-Tenant Server Infrastructures.

Matteo Ferroni, Andrea Corna, Andrea Damiani, Rolando Brondolin, Juan A. Colmenares, Steven A. Hofmeyr, John Kubiatowicz, Marco D. Santambrogio

ACM Trans. Archit. Code Optim., 2017

Extreme-Scale De Novo Genome Assembly.

Evangelos Georganas, Steven A. Hofmeyr, Rob Egan, Aydin Buluç, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick

CoRR, 2017

MerBench: PGAS Benchmarks for High Performance Genome Assembly.

Evangelos Georganas, Marquita Ellis, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick

Proceedings of PAW@SC 2017: Second Annual PGAS Applications Workshop, 2017

The UPC++ PGAS library for Exascale Computing.

John Bachan, Dan Bonachea, Paul Hargrove, Steven A. Hofmeyr, Mathias Jacquelin, Amir Kamil, Brian van Straalen, Scott B. Baden

Proceedings of PAW@SC 2017: Second Annual PGAS Applications Workshop, 2017

Performance Characterization of De Novo Genome Assembly on Leading Parallel Systems.

Marquita Ellis, Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick

Proceedings of the Euro-Par 2017: Parallel Processing - 23rd International Conference on Parallel and Distributed Computing, Santiago de Compostela, Spain, August 28, 2017

2016

Hype and heavy tails: A closer look at data breaches.

Benjamin Edwards, Steven A. Hofmeyr, Stephanie Forrest

J. Cybersecur., 2016

Time-Sharing Redux for Large-Scale HPC Systems.

Steven A. Hofmeyr, Costin Iancu, Juan A. Colmenares, Eric Roman, Brian Austin

Proceedings of the 18th IEEE International Conference on High Performance Computing and Communications; 14th IEEE International Conference on Smart City; 2nd IEEE International Conference on Data Science and Systems, 2016

2015

HipMer: an extreme-scale de novo genome assembler.

Evangelos Georganas, Aydin Buluç, Jarrod Chapman, Steven A. Hofmeyr, Chaitanya Aluru, Rob Egan, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick

Proceedings of the International Conference for High Performance Computing, 2015

Analyzing and Modeling Longitudinal Security Data: Promise and Pitfalls.

Benjamin Edwards, Steven A. Hofmeyr, Stephanie Forrest, Michel van Eeten

Proceedings of the 31st Annual Computer Security Applications Conference, 2015

2014

The Case for Partitioning Virtual Machines on Multicore Architectures.

Khaled Z. Ibrahim, Steven A. Hofmeyr, Costin Iancu

IEEE Trans. Parallel Distributed Syst., 2014

2013

Juggle: addressing extrinsic load imbalances in SPMD applications on multicore computers.

Steven A. Hofmeyr, Juan A. Colmenares, Costin Iancu, John Kubiatowicz

Clust. Comput., 2013

Tessellation: refactoring the OS around explicit resource containers with continuous adaptation.

Juan A. Colmenares, Gage Eads, Steven A. Hofmeyr, Sarah Bird, Miquel Moretó, David Chou, Brian Gluzman, Eric Roman, Davide B. Bartolini, Nitesh Mor, Krste Asanovic, John Kubiatowicz

Proceedings of the 50th Annual Design Automation Conference 2013, 2013

2012

Internet Topology over Time

Benjamin Edwards, Steven A. Hofmeyr, George Stelle, Stephanie Forrest

CoRR, 2012

Beyond the blacklist: modeling malware spread and the effect of interventions.

Benjamin Edwards, Tyler Moore, George Stelle, Steven A. Hofmeyr, Stephanie Forrest

Proceedings of the New Security Paradigms Workshop, 2012

2011

Modeling Internet-Scale Policies for Cleaning up Malware.

Steven A. Hofmeyr, Tyler Moore, Stephanie Forrest, Benjamin Edwards, George Stelle

Proceedings of the 10th Annual Workshop on the Economics of Information Security, 2011

Optimized pre-copy live migration for memory intensive applications.

Khaled Z. Ibrahim, Steven A. Hofmeyr, Costin Iancu, Eric Roman

Proceedings of the Conference on High Performance Computing Networking, 2011

Juggle: proactive load balancing on multicore computers.

Steven A. Hofmeyr, Juan A. Colmenares, Costin Iancu, John Kubiatowicz

Proceedings of the 20th ACM International Symposium on High Performance Distributed Computing, 2011

Tessellation operating system: Building a real-time, responsive, high-throughput client OS for many-core architectures.

Juan A. Colmenares, Sarah Bird, Gage Eads, Steven A. Hofmeyr, Albert Kim, Rohit Poddar, Hilfi Alkaff, Krste Asanovic, John Kubiatowicz

Proceedings of the 2011 IEEE Hot Chips 23 Symposium (HCS), 2011

Characterizing the Performance of Parallel Applications on Multi-socket Virtual Machines.

Khaled Z. Ibrahim, Steven A. Hofmeyr, Costin Iancu

Proceedings of the 11th IEEE/ACM International Symposium on Cluster, 2011

2010

Load balancing on speed.

Steven A. Hofmeyr, Costin Iancu, Filip Blagojevic

Proceedings of the 15th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming, 2010

Oversubscription on multicore processors.

Costin Iancu, Steven A. Hofmeyr, Filip Blagojevic, Yili Zheng

Proceedings of the 24th IEEE International Symposium on Parallel and Distributed Processing, 2010

2008

The Evolution of System-Call Monitoring.

Stephanie Forrest, Steven A. Hofmeyr, Anil Somayaji

Proceedings of the Twenty-Fourth Annual Computer Security Applications Conference, 2008

Runtime optimization of vector operations on large scale SMP clusters.

Costin Iancu, Steven A. Hofmeyr

Proceedings of the 17th International Conference on Parallel Architectures and Compilation Techniques, 2008

2007

Why Today.

Steven A. Hofmeyr

Proceedings of the Information security management handbook, Sixth Edition., 2007

2005

Host intrusion prevention: Part of the operating system or on top of the operating system?

Steven A. Hofmeyr

Comput. Secur., 2005

2004

The implications of immunology for secure systems design.

Steven A. Hofmeyr

Comput. Secur., 2004

2003

A New Approach to Security: Learning from Immunology.

Steven A. Hofmeyr

Inf. Secur. J. A Glob. Perspect., 2003

Why Today's Security Technologies Are So Inadequate: History, Implications, and New Approaches.

Steven A. Hofmeyr

Inf. Secur. J. A Glob. Perspect., 2003

2000

Architecture for an Artificial Immune System.

Steven A. Hofmeyr, Stephanie Forrest

Evol. Comput., 2000

1998

Intrusion Detection Using Sequences of System Calls.

Steven A. Hofmeyr, Stephanie Forrest, Anil Somayaji

J. Comput. Secur., 1998

1997

Intrusion Detection via System Call Traces.

Andrew P. Kosoresow, Steven A. Hofmeyr

IEEE Softw., 1997

Computer Immunology.

Stephanie Forrest, Steven A. Hofmeyr, Anil Somayaji

Commun. ACM, 1997

Principles of a computer immune system.

Anil Somayaji, Steven A. Hofmeyr, Stephanie Forrest

Proceedings of the 1997 Workshop on New Security Paradigms, 1997

1996

A Sense of Self for Unix Processes.

Stephanie Forrest, Steven A. Hofmeyr, Anil Somayaji, Thomas A. Longstaff

Proceedings of the 1996 IEEE Symposium on Security and Privacy, 1996