Steve Horvath

According to our database, Steve Horvath authored at least 29 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Effects of highly active antiretroviral therapy initiation on epigenomic DNA methylation in persons living with HIV.

Joshua Zhang, Mary E. Sehl, Roger Shih, Elizabeth Crabb Breen, Fengxue Li, Ake T. Lu, Jay H. Bream, Priya Duggal, Jeremy Martinson, Steven M. Wolinsky, Otoniel Martinez-Maza, Christina M. Ramirez, Steve Horvath, Beth D. Jamieson

Frontiers Bioinform., 2024

Decreased but persistent epigenetic age acceleration is associated with changes in T-cell subsets after initiation of highly active antiretroviral therapy in persons living with HIV.

Mary E. Sehl, Elizabeth Crabb Breen, Roger Shih, Fengxue Li, Joshua Zhang, Peter Langfelder, Steve Horvath, Jay H. Bream, Priya Duggal, Jeremy Martinson, Steven M. Wolinsky, Otoniel Martinez-Maza, Christina M. Ramirez, Beth D. Jamieson

Frontiers Bioinform., 2024

AESurv: autoencoder survival analysis for accurate early prediction of coronary heart disease.

Yike Shen, Arce Domingo-Relloso, Allison Kupsco, Marianthi-Anna Kioumourtzoglou, Maria Tellez-Plaza, Jason G. Umans, Amanda M. Fretts, Ying Zhang, Peter F. Schnatz, Ramon Casanova, Lisa Warsinger Martin, Steve Horvath, JoAnn E. Manson, Shelley A Cole, Haotian Wu, Eric A Whitsel, Andrea A. Baccarelli, Ana Navas-Acien, Feng Gao

Briefings Bioinform., 2024

2023

Comparative epigenome analysis using Infinium DNA methylation BeadChips.

Wubin Ding, Diljeet Kaur, Steve Horvath, Wanding Zhou

Briefings Bioinform., January, 2023

2013

Cluster and propensity based approximation of a network.

John M. O. Ranola, Peter Langfelder, Kenneth Lange, Steve Horvath

BMC Syst. Biol., 2013

Random generalized linear model: a highly accurate and interpretable ensemble predictor.

Lin Song, Peter Langfelder, Steve Horvath

BMC Bioinform., 2013

2012

Distinct Neurogenomic States in Basal Ganglia Subregions Relate Differently to Singing Behavior in Songbirds.

Austin T. Hilliard, Julie E. Miller, Steve Horvath, Stephanie A. White

PLoS Comput. Biol., 2012

Network methods for describing sample relationships in genomic datasets: application to Huntington's disease.

Michael C. Oldham, Peter Langfelder, Steve Horvath

BMC Syst. Biol., 2012

Comparison of co-expression measures: mutual information, correlation, and model based indices.

Lin Song, Peter Langfelder, Steve Horvath

BMC Bioinform., 2012

2011

Is My Network Module Preserved and Reproducible?

Peter Langfelder, Rui Luo, Michael C. Oldham, Steve Horvath

PLoS Comput. Biol., 2011

Gene networks associated with conditional fear in mice identified using a systems genetics approach.

Christopher C. Park, Greg D. Gale, Simone de Jong, Anatole Ghazalpour, Brian J. Bennett, Charles R. Farber, Peter Langfelder, Andy Lin, Arshad H. Khan, Eleazar Eskin, Steve Horvath, Aldons J. Lusis, Roel A. Ophoff, Desmond J. Smith

BMC Syst. Biol., 2011

Strategies for aggregating gene expression data: The collapseRows R function.

Jeremy A. Miller, Chaochao Cai, Peter Langfelder, Daniel H. Geschwind, Sunil M. Kurian, Daniel R. Salomon, Steve Horvath

BMC Bioinform., 2011

Review of Weighted Gene Coexpression Network Analysis.

Tova Fuller, Peter Langfelder, Angela P. Presson, Steve Horvath

Proceedings of the Handbook of Statistical Bioinformatics., 2011

2010

Detecting network modules in fMRI time series: A weighted network analysis approach.

Jeanette A. Mumford, Steve Horvath, Michael C. Oldham, Peter Langfelder, Daniel H. Geschwind, Russell A. Poldrack

NeuroImage, 2010

Comparing Robust Methods for Defining Directed Networks and Their Hub Nodes.

Peter Langfelder, Tova Fuller, Steve Horvath

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2010

2008

Geometric Interpretation of Gene Coexpression Network Analysis.

Steve Horvath, Jun Dong

PLoS Comput. Biol., 2008

Integrated Weighted Gene Co-expression Network Analysis with an Application to Chronic Fatigue Syndrome.

Angela P. Presson, Eric M. Sobel, Jeanette C. Papp, Charlyn J. Suarez, Toni Whistler, Mangalathu S. Rajeevan, Suzanne D. Vernon, Steve Horvath

BMC Syst. Biol., 2008

Using genetic markers to orient the edges in quantitative trait networks: The NEO software.

Jason E. Aten, Tova Fuller, Aldons J. Lusis, Steve Horvath

BMC Syst. Biol., 2008

WGCNA: an R package for weighted correlation network analysis.

Peter Langfelder, Steve Horvath

BMC Bioinform., 2008

Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut package for R.

Peter Langfelder, Bin Zhang, Steve Horvath

Bioinform., 2008

2007

Eigengene networks for studying the relationships between co-expression modules.

Peter Langfelder, Steve Horvath

BMC Syst. Biol., 2007

Understanding network concepts in modules.

Jun Dong, Steve Horvath

BMC Syst. Biol., 2007

Gene network interconnectedness and the generalized topological overlap measure.

Andy M. Yip, Steve Horvath

BMC Bioinform., 2007

Network neighborhood analysis with the multi-node topological overlap measure.

Ai Li, Steve Horvath

Bioinform., 2007

2006

A Network-Based Gene Screening Approach For Improving the Validation Success of Microarrays.

Wei Zhao, Paul Mischel, Marc Carlson, Bin Zhang, Stanley Nelson, Steve Horvath

Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, 2006

The Generalized Topological Overlap Matrix for Detecting Modules in Gene Networks.

Andy M. Yip, Steve Horvath

Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, 2006

The Multi-Node Topological Overlap Measure For Gene Neighborhood Analysis.

Ai Li, Steve Horvath

Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, 2006

The Relationship Between Intramodular Connectivity and Gene Significance in Co-Expression Networks.

Steve Horvath, Jun Dong, Andy M. Yip

Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, 2006

2005

Ridge regression based hybrid genetic algorithms for multi-locus quantitative trait mapping.

Bin Zhang, Steve Horvath

Int. J. Bioinform. Res. Appl., 2005