Stephen R. Piccolo

According to our database, Stephen R. Piccolo authored at least 13 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

TidyGEO: preparing analysis-ready datasets from Gene Expression Omnibus.

Avery Mecham, Ashlie Stephenson, Badi I. Quinteros, Grace S. Brown, Stephen R. Piccolo

J. Integr. Bioinform., 2024

2023

Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition.

Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy A. Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R. Piccolo, Peijin Han, V. G. Vinod Vydiswaran, Ramya Tekumalla, Juan M. Banda, Parsa Bagherzadeh, Sabine Bergler, João Figueira Silva, Tiago Melo Almeida, Paloma Martínez, Renzo M. Rivera Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez

Database J. Biol. Databases Curation, February, 2023

Evaluating a large language model's ability to solve programming exercises from an introductory bioinformatics course.

Stephen R. Piccolo, Paul Denny, Andrew Luxton-Reilly, Samuel H. Payne, Perry G. Ridge

PLoS Comput. Biol., 2023

Many bioinformatics programming tasks can be automated with ChatGPT.

Stephen R. Piccolo, Paul Denny, Andrew Luxton-Reilly, Samuel H. Payne, Perry G. Ridge

CoRR, 2023

2022

The ability to classify patients based on gene-expression data varies by algorithm and performance metric.

Stephen R. Piccolo, Avery Mecham, Nathan P. Golightly, Jérémie L. Johnson, Dustin B. Miller

PLoS Comput. Biol., 2022

2021

trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios.

Dustin B. Miller, Stephen R. Piccolo

BMC Bioinform., 2021

2020

CompoundHetVIP: Compound Heterozygous Variant Identification Pipeline.

Dustin B. Miller, Stephen R. Piccolo

F1000Research, 2020

2017

DeuteRater: a tool for quantifying peptide isotope precision and kinetic proteomics.

Bradley C. Naylor, Michael T. Porter, Elise Wilson, Adam Herring, Spencer Lofthouse, Austin Hannemann, Stephen R. Piccolo, Alan L. Rockwood, John C. Price

Bioinform., 2017

2015

ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways.

Ying Shen, Mumtahena Rahman, Stephen R. Piccolo, Daniel Gusenleitner, Nader N. El-Chaar, Luis Cheng, Stefano Monti, Andrea H. Bild, W. Evan Johnson

Bioinform., 2015

Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results.

Mumtahena Rahman, Laurie K. Jackson, W. Evan Johnson, Dean Y. Li, Andrea H. Bild, Stephen R. Piccolo

Bioinform., 2015

2013

Clinical and molecular models of Glioblastoma multiforme survival.

Stephen R. Piccolo, Lewis J. Frey

Int. J. Data Min. Bioinform., 2013

2012

ML-Flex: A Flexible Toolbox for Performing Classification Analyses In Parallel.

Stephen R. Piccolo, Lewis J. Frey

J. Mach. Learn. Res., 2012

2008

Somatic Mutation Signatures of Cancer.

Stephen R. Piccolo, Lewis J. Frey

Proceedings of the AMIA 2008, 2008