Stephen G. Oliver

According to our database, Stephen G. Oliver authored at least 37 papers between 2000 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

The Gene Ontology resource: enriching a GOld mine.

Seth Carbon, Eric Douglass, Benjamin M. Good, Deepak R. Unni, Nomi L. Harris, Christopher J. Mungall, Siddartha Basu, Rex L. Chisholm, Robert J. Dodson, Eric Hartline, Petra Fey, Paul D. Thomas, Laurent-Philippe Albou, Dustin Ebert, Michael J. Kesling, Huaiyu Mi, Anushya Muruganujan, Xiaosong Huang, Tremayne Mushayahama, Sandra A. LaBonte, Deborah A. Siegele, Giulia Antonazzo, Helen Attrill, Nick H. Brown, Phani V. Garapati, Steven J. Marygold, Vitor Trovisco, Gilberto dos Santos, Kathleen Falls, Christopher J. Tabone, Pinglei Zhou, Joshua L. Goodman, Victor B. Strelets, Jim Thurmond, Penelope Garmiri, Rizwan Ishtiaq, Milagros Rodríguez-López, Marcio Luis Acencio, Martin Kuiper, Astrid Lægreid, Colin Logie, Ruth C. Lovering, Barbara Kramarz, Shirin C. C. Saverimuttu, Sandra M. Pinheiro, Heather Gunn, Renzhi Su, Katherine E. Thurlow, Marcus C. Chibucos, Michelle G. Giglio, Suvarna Nadendla, James B. Munro, Rebecca C. Jackson, Margaret J. Duesbury, Noemi del-Toro, Birgit H. M. Meldal, Kalpana Paneerselvam, Livia Perfetto, Pablo Porras, Sandra E. Orchard, Anjali Shrivastava, Hsin-Yu Chang, Robert D. Finn, Alex L. Mitchell, Neil D. Rawlings, Lorna J. Richardson, Amaia Sangrador-Vegas, Judith A. Blake, Karen R. Christie, Mary E. Dolan, Harold J. Drabkin, David P. Hill, Li Ni, Dmitry M. Sitnikov, Midori A. Harris, Stephen G. Oliver, Kim Rutherford, Valerie Wood, Jaqueline Hayles, Jürg Bähler, Elizabeth R. Bolton, Jeffrey DePons, Melinda R. Dwinell, G. Thomas Hayman, Mary L. Kaldunski, Anne E. Kwitek, Stanley J. F. Laulederkind, Cody Plasterer, Marek Tutaj, Mahima Vedi, Shur-Jen Wang, Peter D'Eustachio, Lisa Matthews, James P. Balhoff, Suzi A. Aleksander, Michael J. Alexander, J. Michael Cherry, Stacia R. Engel, Felix Gondwe, Kalpana Karra, Stuart R. Miyasato, Robert S. Nash, Matt Simison, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Marc Feuermann, Pascale Gaudet, Anne Morgat, Erica Bakker, Tanya Z. Berardini, Leonore Reiser, Shabari Subramaniam, Eva Huala, Cecilia N. Arighi, Andrea H. Auchincloss, Kristian B. Axelsen, Ghislaine Argoud-Puy, Alex Bateman, Marie-Claude Blatter, Emmanuel Boutet, Emily Bowler, Lionel Breuza, Alan J. Bridge, Ramona Britto, Hema Bye-A-Jee, Cristina Casals-Casas, Elisabeth Coudert, Paul Denny, Anne Estreicher, Maria Livia Famiglietti, George E. Georghiou, Arnaud Gos, Nadine Gruaz-Gumowski, Emma Hatton-Ellis, Chantal Hulo, Alexandr Ignatchenko, Florence Jungo, Kati Laiho, Philippe Le Mercier, Damien Lieberherr, Antonia Lock, Yvonne Lussi, Alistair MacDougall, Michele Magrane, Maria Jesus Martin, Patrick Masson, Darren A. Natale, Nevila Hyka-Nouspikel, Ivo Pedruzzi, Lucille Pourcel, Sylvain Poux, Sangya Pundir, Catherine Rivoire, Elena Speretta, Shyamala Sundaram, Nidhi Tyagi, Kate Warner, Rossana Zaru, Cathy H. Wu, Alexander D. Diehl, Juancarlos Chan, Christian A. Grove, Raymond Y. N. Lee, Hans-Michael Müller, Daniela Raciti, Kimberly Van Auken, Paul W. Sternberg, Matthew Berriman, Michael Paulini, Kevin L. Howe, Sibyl Gao, Adam Wright, Lincoln Stein, Douglas G. Howe, Sabrina Toro, Monte Westerfield, Pankaj Jaiswal, Laurel Cooper, Justin Elser

Nucleic Acids Res., 2021

Data intelligence for process performance prediction in biologics manufacturing.

Nishanthi Gangadharan, David Sewell, Richard Turner, Ray Field, Matthew Cheeks, Stephen G. Oliver, Nigel K. H. Slater, Duygu Dikicioglu

Comput. Chem. Eng., 2021

Extending the Modeling and Analysis Capabilities of Continuous Petri Nets by Flexible Nets.

Jorge Júlvez, Stephen G. Oliver

Proceedings of the 2021 60th IEEE Conference on Decision and Control (CDC), 2021

2020

Steady State Analysis of Flexible Nets.

Jorge Júlvez, Stephen G. Oliver

IEEE Trans. Autom. Control., 2020

fnyzer: A Python Package for the Analysis of Flexible Nets.

Jorge Júlvez, Stephen G. Oliver

Proceedings of the Computational Methods in Systems Biology, 2020

2019

PomBase 2018: user-driven reimplementation of the fission yeast database provides rapid and intuitive access to diverse, interconnected information.

Antonia Lock, Kim Rutherford, Midori A. Harris, Jacqueline Hayles, Stephen G. Oliver, Jürg Bähler, Valerie Wood

Nucleic Acids Res., 2019

Flexible Nets: a modeling formalism for dynamic systems with uncertain parameters.

Jorge Júlvez, Stephen G. Oliver

Discret. Event Dyn. Syst., 2019

2018

TAMMiCol: Tool for analysis of the morphology of microbial colonies.

Hayden Tronnolone, Jennifer M. Gardner, Joanna F. Sundstrom, Vladimir Jiranek, Stephen G. Oliver, Benjamin J. Binder

PLoS Comput. Biol., 2018

2016

CLUSTERnGO: a user-defined modelling platform for two-stage clustering of time-series data.

Isik Baris Fidaner, Ayca Cankorur-Cetinkaya, Duygu Dikicioglu, Betül Kirdar, Ali Taylan Cemgil, Stephen G. Oliver

Bioinform., 2016

2015

Quantifying Two-Dimensional Filamentous and Invasive Growth Spatial Patterns in Yeast Colonies.

Benjamin J. Binder, Joanna F. Sundstrom, Jennifer M. Gardner, Vladimir Jiranek, Stephen G. Oliver

PLoS Comput. Biol., 2015

PomBase 2015: updates to the fission yeast database.

Mark D. McDowall, Midori A. Harris, Antonia Lock, Kim Rutherford, Daniel M. Staines, Jürg Bähler, Paul J. Kersey, Stephen G. Oliver, Valerie Wood

Nucleic Acids Res., 2015

The Challenges of Interpreting Phosphoproteomics Data: A Critical View Through the Bioinformatics Lens.

Panayotis Vlastaridis, Stephen G. Oliver, Yves Van de Peer, Grigoris D. Amoutzias

Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2015

2014

Canto: an online tool for community literature curation.

Kim M. Rutherford, Midori A. Harris, Antonia Lock, Stephen G. Oliver, Valerie Wood

Bioinform., 2014

2013

FYPO: the fission yeast phenotype ontology.

Midori A. Harris, Antonia Lock, Jürg Bähler, Stephen G. Oliver, Valerie Wood

Bioinform., 2013

2012

PomBase: a comprehensive online resource for fission yeast.

Valerie Wood, Midori A. Harris, Mark D. McDowall, Kim Rutherford, Brendan W. Vaughan, Daniel M. Staines, Martin Aslett, Antonia Lock, Jürg Bähler, Paul J. Kersey, Stephen G. Oliver

Nucleic Acids Res., 2012

The genetic control of growth rate: a systems biology study in yeast.

Pinar Pir, Alex Gutteridge, Jian Wu, Bharat Rash, Douglas B. Kell, Nianshu Zhang, Stephen G. Oliver

BMC Syst. Biol., 2012

2011

How yeast re-programmes its transcriptional profile in response to different nutrient impulses.

Duygu Dikicioglu, Muhammed Erkan Karabekmez, Bharat Rash, Pinar Pir, Betül Kirdar, Stephen G. Oliver

BMC Syst. Biol., 2011

The role of proteosome-mediated proteolysis in modulating potentially harmful transcription factor activity in <i>Saccharomyces cerevisiae</i>.

Nicola Bonzanni, Nianshu Zhang, Stephen G. Oliver, Jasmin Fisher

Bioinform., 2011

2010

Further developments towards a genome-scale metabolic model of yeast.

Paul D. Dobson, Kieran Smallbone, Daniel Jameson, Evangelos Simeonidis, Karin Lanthaler, Pinar Pir, Chuan Lu, Neil Swainston, Warwick B. Dunn, Paul Fisher, Duncan Hull, Marie Brown, Olusegun Oshota, Natalie J. Stanford, Douglas B. Kell, Ross D. King, Stephen G. Oliver, Robert D. Stevens, Pedro Mendes

BMC Syst. Biol., 2010

2009

The Robot Scientist Adam.

Ross D. King, Jem J. Rowland, Wayne Aubrey, Maria Liakata, Magdalena Markham, Larisa N. Soldatova, Ken E. Whelan, Amanda Clare, Mike Young, Andrew Sparkes, Stephen G. Oliver, Pinar Pir

Computer, 2009

Information management for high content live cell imaging.

Daniel Jameson, David A. Turner, John Ankers, Stephnie Kennedy, Sheila Ryan, Neil Swainston, Tony Griffiths, David G. Spiller, Stephen G. Oliver, Michael R. H. White, Douglas B. Kell, Norman W. Paton

BMC Bioinform., 2009

2008

ISPIDER Central: an integrated database web-server for proteomics.

Jennifer A. Siepen, Khalid Belhajjame, Julian N. Selley, Suzanne M. Embury, Norman W. Paton, Carole A. Goble, Stephen G. Oliver, Robert Stevens, Lucas Zamboulis, Nigel J. Martin, Alexandra Poulovassilis, Philip Jones, Richard G. Côté, Henning Hermjakob, Melissa M. Pentony, David T. Jones, Christine A. Orengo, Simon J. Hubbard

Nucleic Acids Res., 2008

Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data.

Peter Li, Juan I. Castrillo, Giles Velarde, Ingo Wassink, Stian Soiland-Reyes, Stuart Owen, David Withers, Tom Oinn, Matthew R. Pocock, Carole A. Goble, Stephen G. Oliver, Douglas B. Kell

BMC Bioinform., 2008

Data capture in bioinformatics: requirements and experiences with Pedro.

Daniel Jameson, Kevin L. Garwood, Christopher Garwood, Tim Booth, Pinar Alper, Stephen G. Oliver, Norman W. Paton

BMC Bioinform., 2008

2007

A Methodology for Comparative Functional Genomics.

Intikhab Alam, Mike Cornell, Darren M. Soanes, Cornelia Hedeler, Han Min Wong, Magnus Rattray, Simon J. Hubbard, Nicholas J. Talbot, Stephen G. Oliver, Norman W. Paton

J. Integr. Bioinform., 2007

Similarity in expression accounts for correlated evolution of interacting proteins.

Luke Hakes, Simon C. Lovell, Stephen G. Oliver, David L. Robertson

BMC Syst. Biol., 2007

A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network.

Grigoris D. Amoutzias, Elgar Pichler, Nina Mian, David De Graaf, Anastasia Imsiridou, Marc Robinson-Rechavi, Erich Bornberg-Bauer, David L. Robertson, Stephen G. Oliver

BMC Syst. Biol., 2007

2006

MeMo: a hybrid SQL/XML approach to metabolomic data management for functional genomics.

Irena Spasic, Warwick B. Dunn, Giles Velarde, Andy Tseng, Helen Jenkins, Nigel Hardy, Stephen G. Oliver, Douglas B. Kell

BMC Bioinform., 2006

Integrative investigation of metabolic and transcriptomic data.

Pinar Pir, Betül Kirdar, Andrew Hayes, Z. Ilsen Önsan, Kutlu Ö. Ülgen, Stephen G. Oliver

BMC Bioinform., 2006

Model-driven user interfaces for bioinformatics data resources: regenerating the wheel as an alternative to reinventing it.

Kevin L. Garwood, Christopher Garwood, Cornelia Hedeler, Tony Griffiths, Neil Swainston, Stephen G. Oliver, Norman W. Paton

BMC Bioinform., 2006

2004

CADRE: the Central Aspergillus Data REpository.

J. E. Mabey, M. J. Anderson, Peter F. Giles, Crispin J. Miller, Terri K. Attwood, Norman W. Paton, Erich Bornberg-Bauer, G. D. Robson, Stephen G. Oliver, David W. Denning

Nucleic Acids Res., 2004

Pedro: a configurable data entry tool for XML.

Kevin L. Garwood, Chris F. Taylor, Kai J. Runte, Andy Brass, Stephen G. Oliver, Norman W. Paton

Bioinform., 2004

2003

SiteSeer: visualisation and analysis of transcription factor binding sites in nucleotide sequences.

Paul E. Boardman, Stephen G. Oliver, Simon J. Hubbard

Nucleic Acids Res., 2003

2001

Developing a Logical Model of Yeast Metabolism.

Philip G. K. Reiser, Ross D. King, Douglas B. Kell, Stephen H. Muggleton, Christopher H. Bryant, Stephen G. Oliver

Electron. Trans. Artif. Intell., 2001

Combining Inductive Logic Programming, Active Learning and Robotics to Discover the Function of Genes.

Christopher H. Bryant, Stephen H. Muggleton, Stephen G. Oliver, Douglas B. Kell, Philip G. K. Reiser, Ross D. King

Electron. Trans. Artif. Intell., 2001

GIMS - A Data Warehouse for Storage and Analysis of Genome Sequence and Functional Data.

Mike Cornell, Norman W. Paton, Shengli Wu, Carole A. Goble, Crispin J. Miller, Paul Kirby, Karen Eilbeck, Andy Brass, Andrew Hayes, Stephen G. Oliver

Proceedings of the 2nd IEEE International Symposium on Bioinformatics and Bioengineering, 2001

2000

Conceptual modelling of genomic information.

Norman W. Paton, Shakeel A. Khan, Andrew Hayes, Fouzia Moussouni, Andy Brass, Karen Eilbeck, Carole A. Goble, Simon J. Hubbard, Stephen G. Oliver

Bioinform., 2000