Stephen D. Larson

According to our database, Stephen D. Larson authored at least 17 papers between 2007 and 2016.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2016

Unit testing, model validation, and biological simulation.

Gopal P. Sarma, Travis W. Jacobs, Mark D. Watts, S. Vahid Ghayoomie, Stephen D. Larson, Richard C. Gerkin

F1000Research, 2016

Application of smoothed particle hydrodynamics to modeling mechanisms of biological tissue.

Andrey Palyanov, Sergey Khayrulin, Stephen D. Larson

Adv. Eng. Softw., 2016

2015

Unit Testing, Model Validation, and Biological Simulation.

Gopal P. Sarma, Travis W. Jacobs, Mark D. Watts, Vahid Ghayoomi, Richard C. Gerkin, Stephen D. Larson

CoRR, 2015

2014

OpenWorm: an open-science approach to modeling Caenorhabditis elegans.

Balazs Szigeti, Padraig Gleeson, Michael Vella, Sergey Khayrulin, Andrey Palyanov, Jim Hokanson, Michael Currie, Matteo Cantarelli, Giovanni Idili, Stephen D. Larson

Frontiers Comput. Neurosci., 2014

2013

NeuroLex.org: an online framework for neuroscience knowledge.

Stephen D. Larson, Maryann E. Martone

Frontiers Neuroinformatics, 2013

2012

Towards a virtual C. elegans: A framework for simulation and visualization of the neuromuscular system in a 3D physical environment.

Andrey Palyanov, Sergey Khayrulin, Stephen D. Larson, Alexander Dibert

Silico Biol., 2012

Maturation of Neuroscience Information Framework: An Ontology Driven Information System for Neuroscience.

Fahim T. Imam, Stephen D. Larson, Anita E. Bandrowski, Jeffrey S. Grethe, Amarnath Gupta, Maryann E. Martone

Proceedings of the Formal Ontology in Information Systems, 2012

2011

Digital Atlasing and Standardization in the Mouse Brain.

Michael Hawrylycz, Richard A. Baldock, Albert Burger, Tsutomu Hashikawa, G. Allan Johnson, Maryann E. Martone, Lydia Ng, Christopher Lau, Stephen D. Larson, Jonathan Nissanov, Luis Puelles, Seth Ruffins, Fons J. Verbeek, Ilya Zaslavsky, Jyl Boline

PLoS Comput. Biol., 2011

An Ontology-Based Approach to Linking Model Organisms and Resources to Human Diseases.

Chris Mungall, David Anderson, Anita E. Bandrowski, Brian A. Canada, Andrew Chatr-aryamontri, Keith C. Cheng, P. Michael Conn, Kara Dolinski, Mark H. Ellisman, Janan T. Eppig, Jeffrey S. Grethe, Joseph W. Kemnitz, Shawn Iadonato, Stephen D. Larson, Charles Magness, Maryann E. Martone, Mike Tyers, Carlo Torniai, Olga G. Troyanskaya, Judith Turner, Monte Westerfield, Melissa A. Haendel

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

NIFSTD and NeuroLex: Comprehensive Neuroscience Ontology Development Based on Multiple Biomedical Ontologies and Community Involvement.

Fahim T. Imam, Stephen D. Larson, Jeffrey S. Grethe, Amarnath Gupta, Anita E. Bandrowski, Maryann E. Martone

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2009

NeuroLex.org - A semantic wiki for neuroinformatics based on the NIF Standard Ontology.

Stephen D. Larson, Sarah Maynard, Fahim T. Imam, Maryann E. Martone

Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2009

2008

The Smart Atlas: Spatial and Semantic Strategies for Multiscale Integration of Brain Data.

Maryann E. Martone, Ilya Zaslavsky, Amarnath Gupta, Asif Memon, Joshua Tran, Willy Wong, Lisa Fong, Stephen D. Larson, Mark H. Ellisman

Proceedings of the Anatomy Ontologies for Bioinformatics, Principles and Practice, 2008

The NIFSTD and BIRNLex Vocabularies: Building Comprehensive Ontologies for Neuroscience.

William J. Bug, Giorgio A. Ascoli, Jeffrey S. Grethe, Amarnath Gupta, Christine Fennema-Notestine, Angela R. Laird, Stephen D. Larson, Daniel L. Rubin, Gordon M. Shepherd, Jessica A. Turner, Maryann E. Martone

Neuroinformatics, 2008

2007

A formal ontology of subcellular neuroanatomy.

Stephen D. Larson, Lisa Fong, Amarnath Gupta, Christopher Condit, William J. Bug, Maryann E. Martone

Frontiers Neuroinformatics, 2007

Rule-Based Reasoning With A Multi-Scale Neuroanatomical Ontology.

Stephen D. Larson, Maryann E. Martone

Proceedings of the OWLED 2007 Workshop on OWL: Experiences and Directions, 2007

An Ontology-Driven Knowledge Environment For Subcellular Neuroanatomy.

Lisa Fong, Stephen D. Larson, Amarnath Gupta, Christopher Condit, William J. Bug, Li Chen, Ruth West, Stephan Lamont, Masako Terada, Maryann E. Martone

Proceedings of the OWLED 2007 Workshop on OWL: Experiences and Directions, 2007

Toward an Ontological Database for Subcellular Neuroanatomy.

Amarnath Gupta, Stephen D. Larson, Christopher Condit, Sandeep Gupta, Lisa Fong, Li Chen, Maryann E. Martone

Proceedings of the Advances in Conceptual Modeling - Foundations and Applications, 2007