Stephan H. Bernhart

According to our database, Stephan H. Bernhart authored at least 19 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

TREMSUCS-TCGA - an integrated workflow for the identification of biomarkers for treatment success.

Gábor Balogh, Natasha Jorge, Célia Dupain, Maud Kamal, Nicolas Servant, Christophe Le Tourneau, Peter F. Stadler, Stephan H. Bernhart

J. Integr. Bioinform., 2024

2020

A probabilistic version of Sankoff's maximum parsimony algorithm.

Gábor Balogh, Stephan H. Bernhart, Peter F. Stadler, Jana Schor

J. Bioinform. Comput. Biol., 2020

2018

DIEGO: detection of differential alternative splicing using Aitchison's geometry.

Gero Doose, Stephan H. Bernhart, Rabea Wagener, Steve Hoffmann

Bioinform., 2018

2013

2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction.

Ronny Lorenz, Stephan H. Bernhart, Jing Qin, Christian Höner zu Siederdissen, Andrea Tanzer, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler

IEEE ACM Trans. Comput. Biol. Bioinform., 2013

The Trouble with Long-Range Base Pairs in RNA Folding.

Fabian Amman, Stephan H. Bernhart, Gero Doose, Ivo L. Hofacker, Jing Qin, Peter F. Stadler, Sebastian Will

Proceedings of the Advances in Bioinformatics and Computational Biology, 2013

2012

Folding RNA/DNA hybrid duplexes.

Ronny Lorenz, Ivo L. Hofacker, Stephan H. Bernhart

Bioinform., 2012

RNA Folding Algorithms with G-Quadruplexes.

Ronny Lorenz, Stephan H. Bernhart, Fabian Externbrink, Jing Qin, Christian Höner zu Siederdissen, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler

Proceedings of the Advances in Bioinformatics and Computational Biology, 2012

2011

A folding algorithm for extended RNA secondary structures.

Christian Höner zu Siederdissen, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker

Bioinform., 2011

ViennaRNA Package 2.0.

Ronny Lorenz, Stephan H. Bernhart, Christian Höner zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker

Algorithms Mol. Biol., 2011

RNA Accessibility in cubic time.

Stephan H. Bernhart, Ulrike Mückstein, Ivo L. Hofacker

Algorithms Mol. Biol., 2011

2010

RNALfoldz: Efficient Prediction of Thermodynamically Stable, Local Secondary Structures.

Andreas R. Gruber, Stephan H. Bernhart, You Zhou, Ivo L. Hofacker

Proceedings of the German Conference on Bioinformatics 2010, 2010

2008

The Vienna RNA Websuite.

Andreas R. Gruber, Ronny Lorenz, Stephan H. Bernhart, Richard Neuböck, Ivo L. Hofacker

Nucleic Acids Res., 2008

Strategies for measuring evolutionary conservation of RNA secondary structures.

Andreas R. Gruber, Stephan H. Bernhart, Ivo L. Hofacker, Stefan Washietl

BMC Bioinform., 2008

RNAalifold: improved consensus structure prediction for RNA alignments.

Stephan H. Bernhart, Ivo L. Hofacker, Sebastian Will, Andreas R. Gruber, Peter F. Stadler

BMC Bioinform., 2008

Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding Thermodynamics.

Ulrike Mückstein, Hakim Tafer, Stephan H. Bernhart, Maribel Hernandez-Rosales, Jörg Vogel, Peter F. Stadler, Ivo L. Hofacker

Proceedings of the Bioinformatics Research and Development, 2008

2006

Thermodynamics of RNA-RNA binding.

Ulrike Mückstein, Hakim Tafer, Jörg Hackermüller, Stephan H. Bernhart, Peter F. Stadler, Ivo L. Hofacker

Bioinform., 2006

Local RNA base pairing probabilities in large sequences.

Stephan H. Bernhart, Ivo L. Hofacker, Peter F. Stadler

Bioinform., 2006

Partition function and base pairing probabilities of RNA heterodimers.

Stephan H. Bernhart, Hakim Tafer, Ulrike Mückstein, Christoph Flamm, Peter F. Stadler, Ivo L. Hofacker

Algorithms Mol. Biol., 2006

2004

Alignment of RNA base pairing probability matrices.

Ivo L. Hofacker, Stephan H. Bernhart, Peter F. Stadler

Bioinform., 2004