Steffen Neumann

According to our database, Steffen Neumann authored at least 31 papers between 1999 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

Ontologies for increasing the FAIRness of plant research data.

Kathryn Dumschott, Hannah Dörpholz, Marie-Angélique Laporte, Dominik Brilhaus, Andrea Schrader, Björn Usadel, Steffen Neumann, Elizabeth Arnaud, Angela Kranz

CoRR, 2023

Harmonising, Harvesting, and Searching Metadata Across a Repository Federation.

Steffen Neumann, Felix Bach, Leyla Jael Castro, Tillmann Fischer, Stefan Hofmann, Pei-Chi Huang, Nicole Jung, Bhavin Katabathuni, Fabian Mauz, René Meier, Venkata Chandrasekhar Nainala, Noura Rayya, Christoph Steinbeck, Oliver Koepler

Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

Digitalizing the Chemical Landscape: A Comprehensive Overview and Progress Report of NFDI4Chem.

Oliver Koepler, Christoph Steinbeck, Felix Bach, Sonja Herres-Pawlis, Nicole Jung, Johannes Liermann, Steffen Neumann, Matthias Razum

Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

Schema.org as a Lightweight Harmonization Approach for NFDI.

Leyla Jael Castro, Juliane Fluck, Daniel Arend, Matthias Lange, Daniel Martini, Steffen Neumann, Sonja Schimmler, Dietrich Rebholz-Schuhmann

Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

2021

Empowering large chemical knowledge bases for exposomics: PubChemLite meets MetFrag.

Emma Schymanski, Todor Kondic, Steffen Neumann, Paul A. Thiessen, Jian Zhang, Evan Bolton

J. Cheminformatics, 2021

2019

Improving MetFrag with statistical learning of fragment annotations.

Christoph Ruttkies, Steffen Neumann, Stefan Posch

BMC Bioinform., 2019

Interoperable and scalable data analysis with microservices: applications in metabolomics.

Payam Emami Khoonsari, Pablo A. Moreno, Sven Bergmann, Joachim Burman, Marco Capuccini, Matteo Carone, Marta Cascante, Pedro de Atauri, Carles Foguet, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Sijin He, Stephanie Herman, David Johnson, Namrata Kale, Anders Larsson, Steffen Neumann, Kristian Peters, Luca Pireddu, Philippe Rocca-Serra, Pierrick Roger, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi, Reza M. Salek, Susanna-Assunta Sansone, Daniel Schober, Vitaly A. Selivanov, Etienne A. Thévenot, Michael van Vliet, Gianluigi Zanetti, Christoph Steinbeck, Kim Kultima, Ola Spjuth

Bioinform., 2019

2017

Computational Metabolomics (NII Shonan Meeting 2017-3).

Masanori Arita, Sebastian Böcker, Steffen Neumann

NII Shonan Meet. Rep., 2017

Critical Assessment of Small Molecule Identification 2016: automated methods.

Emma Schymanski, Christoph Ruttkies, Martin Krauss, Céline Brouard, Tobias Kind, Kai Dührkop, Felicity Allen, Arpana Vaniya, Dries Verdegem, Sebastian Böcker, Juho Rousu, Huibin Shen, Hiroshi Tsugawa, Tanvir Sajed, Oliver Fiehn, Bart Ghesquière, Steffen Neumann

J. Cheminformatics, 2017

The future of metabolomics in ELIXIR.

Merlijn N. van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez Del Angel, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-García, Rafael C. Jiménez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Nicholas K. Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata P. Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck

F1000Research, 2017

2016

MetFrag relaunched: incorporating strategies beyond in silico fragmentation.

Christoph Ruttkies, Emma Schymanski, Sebastian Wolf, Juliane Hollender, Steffen Neumann

J. Cheminformatics, 2016

Towards standardized evidence descriptors for metabolite annotations.

Daniel Schober, Reza M. Salek, Steffen Neumann

Proceedings of the 7th Workshop on Ontologies and Data in Life Sciences, 2016

2015

BiNChE: A web tool and library for chemical enrichment analysis based on the ChEBI ontology.

Pablo A. Moreno, Stephan Beisken, Bhavana Harsha, Venkatesh Muthukrishnan, Ilinca Tudose, Adriano Dekker, Stefanie Dornfeldt, Franziska Taruttis, Ivo Grosse, Janna Hastings, Steffen Neumann, Christoph Steinbeck

BMC Bioinform., 2015

IPO: a tool for automated optimization of XCMS parameters.

Gunnar Libiseller, Michaela Dvorzak, Ulrike Kleb, Edgar Gander, Tobias Eisenberg, Frank Madeo, Steffen Neumann, Gert Trausinger, Frank Sinner, Thomas Pieber, Christoph Magnes

BMC Bioinform., 2015

2014

The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again.

Alejandra N. González-Beltrán, Steffen Neumann, Eamonn Maguire, Susanna-Assunta Sansone, Philippe Rocca-Serra

BMC Bioinform., 2014

2013

MetaboLights - an open-access general-purpose repository for metabolomics studies and associated meta-data.

Kenneth Haug, Reza M. Salek, Pablo Conesa, Janna Hastings, Paula de Matos, Mark Rijnbeek, Tejasvi Mahendraker, Mark Williams, Steffen Neumann, Philippe Rocca-Serra, Eamonn Maguire, Alejandra N. González-Beltrán, Susanna-Assunta Sansone, Julian L. Griffin, Christoph Steinbeck

Nucleic Acids Res., 2013

Ontological analysis of controlled vocabularies used in PSI/MSI supported XML standards.

Daniel Schober, Gerhard Mayer, Annick Moing, Martin Eisenacher, Steffen Neumann

Proceedings of the 43. Jahrestagung der Gesellschaft für Informatik, 2013

2011

Database supported candidate search for Metabolite identification.

Christian Hildebrandt, Sebastian Wolf, Steffen Neumann

J. Integr. Bioinform., 2011

2010

In silico fragmentation for computer assisted identification of metabolite mass spectra.

Sebastian Wolf, Stephan Schmidt, Matthias Müller-Hannemann, Steffen Neumann

BMC Bioinform., 2010

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level.

Philippe Rocca-Serra, Marco Brandizi, Eamonn Maguire, Nataliya Sklyar, Chris F. Taylor, Kimberly Begley, Dawn Field, Stephen C. Harris, Winston Hide, Oliver Hofmann, Steffen Neumann, Peter Sterk, Weida Tong, Susanna-Assunta Sansone

Bioinform., 2010

2008

Highly sensitive feature detection for high resolution LC/MS.

Ralf Tautenhahn, Christoph Böttcher, Steffen Neumann

BMC Bioinform., 2008

Critical assessment of alignment procedures for LC-MS proteomics and metabolomics measurements.

Eva Lange, Ralf Tautenhahn, Steffen Neumann, Clemens Gröpl

BMC Bioinform., 2008

Building blocks for automated elucidation of metabolites: Machine learning methods for NMR prediction.

Stefan Kuhn, Björn Egert, Steffen Neumann, Christoph Steinbeck

BMC Bioinform., 2008

2007

MetHouse: Raw and Preprocessed Mass Spectrometry Data.

Antje Gaida, Steffen Neumann

J. Integr. Bioinform., 2007

Workshop on Knowledge Discovery, Data Mining, and Machine Learning and Workshop on Bioinformatics.

Alexander Hinneburg, Ralf Klinkenberg, Ingo Mierswa, Stefan Posch, Steffen Neumann

Proceedings of the LWA 2007: Lernen - Wissen, 2007

Fast Approximate Duplicate Detection for 2D-NMR Spectra.

Björn Egert, Steffen Neumann, Alexander Hinneburg

Proceedings of the Data Integration in the Life Sciences, 4th International Workshop, 2007

Annotation of LC/ESI-MS Mass Signals.

Ralf Tautenhahn, Christoph Böttcher, Steffen Neumann

Proceedings of the Bioinformatics Research and Development, First International Conference, 2007

2006

Storage and Processing of Mass Spectrometry Data.

Sebastian Klie, Steffen Neumann

Proceedings of the 17th International Workshop on Database and Expert Systems Applications (DEXA 2006), 2006

2005

Database driven test case generation for protein?Cprotein docking.

Frank Zöllner, Steffen Neumann, Franz Kummert, Gerhard Sagerer

Bioinform., 2005

2002

Comparing bound and unbound protein structures using energy calculation and rotamer statistics.

Kerstin Koch, Frank Zöllner, Steffen Neumann, Franz Kummert, Gerhard Sagerer

Silico Biol., 2002

1999

Towards Evaluation of Docking Hypotheses using elastic Matching.

Steffen Neumann, Stefan Posch, Gerhard Sagerer

Proceedings of the German Conference on Bioinformatics, 1999