Stefano Toppo

According to our database, Stefano Toppo authored at least 16 papers between 2002 and 2023.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2023

FunTaxIS-lite: a simple and light solution to investigate protein functions in all living organisms.

Federico Bianca, Emilio Ispano, Ermanno Gazzola, Enrico Lavezzo, Paolo Fontana, Stefano Toppo

Bioinform., September, 2023

2020

QPARSE: searching for long-looped or multimeric G-quadruplexes potentially distinctive and druggable.

Michele Berselli, Enrico Lavezzo, Stefano Toppo

Bioinform., 2020

2018

G-quadruplex forming sequences in the genome of all known human viruses: A comprehensive guide.

Enrico Lavezzo, Michele Berselli, Ilaria Frasson, Rosalba Perrone, Giorgio Palù, Alessandra R. Brazzale, Sara N. Richter, Stefano Toppo

PLoS Comput. Biol., 2018

Optimizing PCR primers targeting the bacterial 16S ribosomal RNA gene.

Francesco Sambo, Francesca Finotello, Enrico Lavezzo, Giacomo Baruzzo, Giulia Masi, Elektra Peta, Marco Falda, Stefano Toppo, Luisa Barzon, Barbara Di Camillo

BMC Bioinform., 2018

NeSSie: a tool for the identification of approximate DNA sequence symmetries.

Michele Berselli, Enrico Lavezzo, Stefano Toppo

Bioinform., 2018

2017

Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms.

Luca Bianco, Samantha Riccadonna, Enrico Lavezzo, Marco Falda, Elide Formentin, Duccio Cavalieri, Stefano Toppo, Paolo Fontana

Bioinform., 2017

2014

Reducing bias in RNA sequencing data: a novel approach to compute counts.

Francesca Finotello, Enrico Lavezzo, Luca Bianco, Luisa Barzon, Paolo Mazzon, Paolo Fontana, Stefano Toppo, Barbara Di Camillo

BMC Bioinform., 2014

keeSeek: searching distant non-existing words in genomes for PCR-based applications.

Marco Falda, Paolo Fontana, Luisa Barzon, Stefano Toppo, Enrico Lavezzo

Bioinform., 2014

2013

Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications.

Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-Chun Feng, Lynnette Ferguson, Geoffrey C. Fox, Dmitrij Frishman, Robert Grossman, Allison P. Heath, Roger Higdon, Mara H. Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander E. Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda May, George Mias, Matthew E. Monroe, Elizabeth Montague, Sean D. Mooney, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, Michael Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H. Voy, Louise Warnich, Steven W. Wilhelm, Gregory Yandl

Big Data, 2013

2012

Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms.

Marco Falda, Stefano Toppo, Alessandro Pescarolo, Enrico Lavezzo, Barbara Di Camillo, Andrea Facchinetti, Elisa Cilia, Riccardo Velasco, Paolo Fontana

BMC Bioinform., 2012

Comparative analysis of algorithms for whole-genome assembly of pyrosequencing data.

Francesca Finotello, Enrico Lavezzo, Paolo Fontana, Denis Peruzzo, Alessandro Albiero, Luisa Barzon, Marco Falda, Barbara Di Camillo, Stefano Toppo

Briefings Bioinform., 2012

2006

Improving the quality of protein structure models by selecting from alignment alternatives.

Ingolf Sommer, Stefano Toppo, Oliver Sander, Thomas Lengauer, Silvio C. E. Tosatto

BMC Bioinform., 2006

2005

The SSEA server for protein secondary structure alignment.

Paolo Fontana, Eckart Bindewald, Stefano Toppo, Riccardo Velasco, Giorgio Valle, Silvio C. E. Tosatto

Bioinform., 2005

2003

TRAIT (TRAnscript Integrated Table): a knowledgebase of human skeletal muscle transcripts.

Stefano Toppo, Nicola Cannata, Paolo Fontana, Chiara Romualdi, Paolo Laveder, Emanuela Bertocco, Gerolamo Lanfranchi, Giorgio Valle

Bioinform., 2003

2002

Development and production of an oligonucleotide MuscleChip: use for validation of ambiguous ESTs.

Rehannah H. A. Borup, Stefano Toppo, Yi-Wen Chen, Tanya M. Teslovich, Gerolamo Lanfranchi, Giorgio Valle, Eric P. Hoffman

BMC Bioinform., 2002

Simplifying amino acid alphabets by means of a branch and bound algorithm and substitution matrices.

Nicola Cannata, Stefano Toppo, Chiara Romualdi, Giorgio Valle

Bioinform., 2002