Stefano Markidis

J. Comput. Phys., September, 2023

Large-Scale direct numerical simulations of turbulence using GPUs and modern Fortran.

[BibT_eX]

[DOI]

Int. J. High Perform. Comput. Appl., September, 2023

Programming Quantum Neural Networks on NISQ Systems: An Overview of Technologies and Methodologies.

[BibT_eX]

[DOI]

Entropy, April, 2023

Krylov Solvers for Interior Point Methods with Applications in Radiation Therapy.

[BibT_eX]

[DOI]

Felix Liu

Albin Fredriksson

CoRR, 2023

Quantum Computer Simulations at Warp Speed: Assessing the Impact of GPU Acceleration.

[BibT_eX]

[DOI]

CoRR, 2023

Leveraging HPC Profiling & Tracing Tools to Understand the Performance of Particle-in-Cell Monte Carlo Simulations.

[BibT_eX]

[DOI]

CoRR, 2023

VESTEC: Visual Exploration and Sampling Toolkit for Extreme Computing.

[BibT_eX]

[DOI]

IEEE Access, 2023

Enabling Quantum Computer Simulations on AMD GPUs: a HIP Backend for Google's qsim.

[BibT_eX]

[DOI]

Proceedings of the SC '23 Workshops of The International Conference on High Performance Computing, 2023

Uncertainty Quantification of Reduced-Precision Time Series in Turbulent Channel Flow.

[BibT_eX]

[DOI]

Proceedings of the SC '23 Workshops of The International Conference on High Performance Computing, 2023

Exploring the Ultimate Regime of Turbulent Rayleigh-Bénard Convection Through Unprecedented Spectral-Element Simulations.

[BibT_eX]

[DOI]

Proceedings of the International Conference for High Performance Computing, 2023

Fast Electromagnetic Field Pattern Calculation with Fourier Neural Operators.

[BibT_eX]

[DOI]

Nattawat Pornthisan

Daniel Araújo de Medeiros

Proceedings of the Computational Science - ICCS 2023, 2023

LibCOS: Enabling Converged HPC and Cloud Data Stores with MPI.

[BibT_eX]

[DOI]

Proceedings of the International Conference on High Performance Computing in Asia-Pacific Region, 2023

A Case Study on DaCe Portability & Performance for Batched Discrete Fourier Transforms.

[BibT_eX]

[DOI]

Måns Ivar Andersson

Proceedings of the International Conference on High Performance Computing in Asia-Pacific Region, 2023

Leveraging HPC Profiling and Tracing Tools to Understand the Performance of Particle-in-Cell Monte Carlo Simulations.

[BibT_eX]

[DOI]

Proceedings of the Euro-Par 2023: Parallel Processing Workshops - Euro-Par 2023 International Workshops, Limassol, Cyprus, August 28, 2023

Boosting the Performance of Object Tracking with a Half-Precision Particle Filter on GPU.

[BibT_eX]

[DOI]

Proceedings of the Euro-Par 2023: Parallel Processing Workshops - Euro-Par 2023 International Workshops, Limassol, Cyprus, August 28, 2023

OpenCUBE: Building an Open Source Cloud Blueprint with EPI Systems.

[BibT_eX]

[DOI]

Proceedings of the Euro-Par 2023: Parallel Processing Workshops - Euro-Par 2023 International Workshops, Limassol, Cyprus, August 28, 2023

Parallel Cholesky Factorization for Banded Matrices Using OpenMP Tasks.

[BibT_eX]

[DOI]

Felix Liu

Albin Fredriksson

Proceedings of the Euro-Par 2023: Parallel Processing - 29th International Conference on Parallel and Distributed Computing, Limassol, Cyprus, August 28, 2023

Leveraging MLIR for Loop Vectorization and GPU Porting of FFT Libraries.

[BibT_eX]

[DOI]

Yifei He

Artur Podobas

Proceedings of the Euro-Par 2023: Parallel Processing Workshops - Euro-Par 2023 International Workshops, Limassol, Cyprus, August 28, 2023

In-Situ Techniques on GPU-Accelerated Data-Intensive Applications.

[BibT_eX]

[DOI]

Proceedings of the 19th IEEE International Conference on e-Science, 2023

Quantum Computer Simulations at Warp Speed: Assessing the Impact of GPU Acceleration: A Case Study with IBM Qiskit Aer, Nvidia Thrust & cuQuantum.

[BibT_eX]

[DOI]

Proceedings of the 19th IEEE International Conference on e-Science, 2023

QHDL: a Low-Level Circuit Description Language for Quantum Computing.

[BibT_eX]

[DOI]

Gilbert Netzer

Proceedings of the 20th ACM International Conference on Computing Frontiers, 2023

Improving Cloud Storage Network Bandwidth Utilization of Scientific Applications.

[BibT_eX]

[DOI]

Proceedings of the 7th Asia-Pacific Workshop on Networking, 2023

2022

A survey of HPC algorithms and frameworks for large-scale gradient-based nonlinear optimization.

[BibT_eX]

[DOI]

Felix Liu

Albin Fredriksson

J. Supercomput., 2022

In situ visualization of large-scale turbulence simulations in Nek5000 with ParaView Catalyst.

[BibT_eX]

[DOI]

J. Supercomput., 2022

On physics-informed neural networks for quantum computers.

[BibT_eX]

[DOI]

Frontiers Appl. Math. Stat., 2022

Workflows to Driving High-Performance Interactive Supercomputing for Urgent Decision Making.

[BibT_eX]

[DOI]

Proceedings of the High Performance Computing. ISC High Performance 2022 International Workshops - Hamburg, Germany, May 29, 2022

Distributed Objective Function Evaluation for Optimization of Radiation Therapy Treatment Plans.

[BibT_eX]

[DOI]

Proceedings of the Parallel Processing and Applied Mathematics, 2022

Breaking Down the Parallel Performance of GROMACS, a High-Performance Molecular Dynamics Software.

[BibT_eX]

[DOI]

Måns I. Andersson

Natarajan Arul Murugan

Artur Podobas

Proceedings of the Parallel Processing and Applied Mathematics, 2022

Exploring Techniques for the Analysis of Spontaneous Asynchronicity in MPI-Parallel Applications.

[BibT_eX]

[DOI]

Proceedings of the Parallel Processing and Applied Mathematics, 2022

NoaSci: A Numerical Object Array Library for I/O of Scientific Applications on Object Storage.

[BibT_eX]

[DOI]

Proceedings of the 30th Euromicro International Conference on Parallel, 2022

Reducing communication in the conjugate gradient method: a case study on high-order finite elements.

[BibT_eX]

[DOI]

Proceedings of the PASC '22: Platform for Advanced Scientific Computing Conference, Basel, Switzerland, June 27, 2022

Strong Scaling of OpenACC enabled Nek5000 on several GPU based HPC systems.

[BibT_eX]

[DOI]

Proceedings of the HPC Asia 2022: International Conference on High Performance Computing in Asia-Pacific Region, Virtual Event, Japan, January 12, 2022

A High-Fidelity Flow Solver for Unstructured Meshes on Field-Programmable Gate Arrays: Design, Evaluation, and Future Challenges.

[BibT_eX]

[DOI]

Proceedings of the HPC Asia 2022: International Conference on High Performance Computing in Asia-Pacific Region, Virtual Event, Japan, January 12, 2022

FFTc: An MLIR Dialect for Developing HPC Fast Fourier Transform Libraries.

[BibT_eX]

[DOI]

Proceedings of the Euro-Par 2022: Parallel Processing Workshops, 2022

Understanding the Impact of Synchronous, Asynchronous, and Hybrid In-Situ Techniques in Computational Fluid Dynamics Applications.

[BibT_eX]

[DOI]

Proceedings of the 18th IEEE International Conference on e-Science, 2022

2021

The Old and the New: Can Physics-Informed Deep-Learning Replace Traditional Linear Solvers?

[BibT_eX]

[DOI]

Frontiers Big Data, 2021

A Review on Parallel Virtual Screening Softwares for High Performance Computers.

[BibT_eX]

[DOI]

Natarajan Arul Murugan

CoRR, 2021

A High-Fidelity Flow Solver for Unstructured Meshes on Field-Programmable Gate Arrays.

[BibT_eX]

[DOI]

CoRR, 2021

Neko: A Modern, Portable, and Scalable Framework for High-Fidelity Computational Fluid Dynamics.

[BibT_eX]

[DOI]

CoRR, 2021

Physics-Informed Deep-Learning for Scientific Computing.

[BibT_eX]

[DOI]

Naresh Balaji Ravichandran

CoRR, 2021

Utilising urgent computing to tackle the spread of mosquito-borne diseases.

[BibT_eX]

[DOI]

Proceedings of the IEEE/ACM HPC for Urgent Decision Making, 2021

Understanding the I/O Impact on the Performance of High-Throughput Molecular Docking.

[BibT_eX]

[DOI]

Proceedings of the 6th IEEE/ACM International Parallel Data Systems Workshop, 2021

Mamba: Portable Array-based Abstractions for Heterogeneous High-Performance Systems.

[BibT_eX]

[DOI]

Proceedings of the International Workshop on Performance, 2021

Accelerating Radiation Therapy Dose Calculation with Nvidia GPUs.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2021

High-Performance Spectral Element Methods on Field-Programmable Gate Arrays : Implementation, Evaluation, and Future Projection.

[BibT_eX]

[DOI]

Proceedings of the 35th IEEE International Parallel and Distributed Processing Symposium, 2021

StreamBrain: An HPC Framework for Brain-like Neural Networks on CPUs, GPUs and FPGAs.

[BibT_eX]

[DOI]

Pawel Andrzej Herman

Anders Lansner

Proceedings of the HEART '21: 11th International Symposium on Highly Efficient Accelerators and Reconfigurable Technologies, 2021

Higgs Boson Classification: Brain-inspired BCPNN Learning with StreamBrain.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Cluster Computing, 2021

A Deep Learning-Based Particle-in-Cell Method for Plasma Simulations.

[BibT_eX]

[DOI]

Xavier Aguilar

Proceedings of the IEEE International Conference on Cluster Computing, 2021

2020

AllScale toolchain pilot applications: PDE based solvers using a parallel development environment.

[BibT_eX]

[DOI]

Comput. Phys. Commun., 2020

High-Performance Spectral Element Methods on Field-Programmable Gate Arrays.

[BibT_eX]

[DOI]

CoRR, 2020

Optimization of Tensor-product Operations in Nekbone on GPUs.

[BibT_eX]

[DOI]

CoRR, 2020

Automatic Particle Trajectory Classification in Plasma Simulations.

[BibT_eX]

[DOI]

Artur Podobas

Itthinat Jongsuebchoke

Gabriel Bengtsson

Pawel Andrzej Herman

Proceedings of the 6th IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments, 2020

sputniPIC: An Implicit Particle-in-Cell Code for Multi-GPU Systems.

[BibT_eX]

[DOI]

Proceedings of the 32nd IEEE International Symposium on Computer Architecture and High Performance Computing, 2020

tf-Darshan: Understanding Fine-grained I/O Performance in Machine Learning Workloads.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Conference on Cluster Computing, 2020

2019

SAGE: Percipient Storage for Exascale Data Centric Computing.

[BibT_eX]

[DOI]

Parallel Comput., 2019

Interoperability strategies for GASPI and MPI in large-scale scientific applications.

[BibT_eX]

[DOI]

Christian Simmendinger

Int. J. High Perform. Comput. Appl., 2019

Memory Efficient Load Balancing for Distributed Large-Scale Volume Rendering Using a Two-Layered Group Structure.

[BibT_eX]

[DOI]

IEICE Trans. Inf. Syst., 2019

Automated classification of plasma regions using 3D particle energy distribution.

[BibT_eX]

[DOI]

CoRR, 2019

Performance Evaluation of Advanced Features in CUDA Unified Memory.

[BibT_eX]

[DOI]

Steven Wei Der Chien

Proceedings of the 2019 IEEE/ACM Workshop on Memory Centric High Performance Computing, 2019

Persistent coarrays: integrating MPI storage windows in coarray fortran.

[BibT_eX]

[DOI]

Sergio Rivas-Gomez

Alessandro Fanfarillo

Sai Narasimhamurthy

Proceedings of the 26th European MPI Users' Group Meeting, 2019

Posit NPB: Assessing the Precision Improvement in HPC Scientific Applications.

[BibT_eX]

[DOI]

Steven Wei Der Chien

Proceedings of the Parallel Processing and Applied Mathematics, 2019

TensorFlow Doing HPC.

[BibT_eX]

[DOI]

Proceedings of the IEEE International Parallel and Distributed Processing Symposium Workshops, 2019

Multi-GPU Acceleration of the iPIC3D Implicit Particle-in-Cell Code.

[BibT_eX]

[DOI]

Chaitanya Prasad Sishtla

Proceedings of the Computational Science - ICCS 2019, 2019

uMMAP-IO: User-Level Memory-Mapped I/O for HPC.

[BibT_eX]

[DOI]

Sergio Rivas-Gomez

Alessandro Fanfarillo

Sébastien Valat

Christophe Laferriere

Philippe Couvée

Sai Narasimhamurthy

Dimitrios S. Nikolopoulos

Proceedings of the 26th IEEE International Conference on High Performance Computing, 2019

Analyzing the suitability of contemporary 3D-stacked PIM architectures for HPC scientific applications.

[BibT_eX]

[DOI]

Proceedings of the 16th ACM International Conference on Computing Frontiers, 2019

2018

A taxonomy of task-based parallel programming technologies for high-performance computing.

[BibT_eX]

[DOI]

J. Supercomput., 2018

MPI windows on storage for HPC applications.

[BibT_eX]

[DOI]

Parallel Comput., 2018

Characterizing the performance benefit of hybrid memory system for HPC applications.

[BibT_eX]

[DOI]

Parallel Comput., 2018

The SAGE Project: a Storage Centric Approach for Exascale Computing.

[BibT_eX]

[DOI]

CoRR, 2018

Exploring Scientific Application Performance Using Large Scale Object Storage.

[BibT_eX]

[DOI]

Proceedings of the High Performance Computing, 2018

Characterizing Deep-Learning I/O Workloads in TensorFlow.

[BibT_eX]

[DOI]

Steven Wei Der Chien

Muhammed Abdullah Al Ahad

Chaitanya Prasad Sishtla

Proceedings of the 3rd IEEE/ACM International Workshop on Parallel Data Storage & Data Intensive Scalable Computing Systems, 2018

Efficient Algorithms for Collective Operations with Notified Communication in Shared Windows.

[BibT_eX]

[DOI]

Christian Simmendinger

Roman Iakymchuk

Erwin Laure

Proceedings of the 2018 IEEE/ACM Parallel Applications Workshop, Alternatives To MPI, 2018

Exploring the Vision Processing Unit as Co-Processor for Inference.

[BibT_eX]

[DOI]

Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium Workshops, 2018

NVIDIA Tensor Core Programmability, Performance & Precision.

[BibT_eX]

[DOI]

Proceedings of the 2018 IEEE International Parallel and Distributed Processing Symposium Workshops, 2018

Decoupled Strategy for Imbalanced Workloads in MapReduce Frameworks.

[BibT_eX]

[DOI]

Proceedings of the 20th IEEE International Conference on High Performance Computing and Communications; 16th IEEE International Conference on Smart City; 4th IEEE International Conference on Data Science and Systems, 2018

The SAGE project: a storage centric approach for exascale computing: invited paper.

[BibT_eX]

[DOI]

Proceedings of the 15th ACM International Conference on Computing Frontiers, 2018

2017

MPI Streams for HPC Applications.

[BibT_eX]

[DOI]

CoRR, 2017

Exploring the Performance Benefit of Hybrid Memory System on HPC Environments.

[BibT_eX]

[DOI]

CoRR, 2017

Progress towards physics-based space weather forecasting with exascale computing.

[BibT_eX]

[DOI]

Dimitrios S. Nikolopoulos

Adv. Eng. Softw., 2017

A Taxonomy of Task-Based Technologies for High-Performance Computing.

[BibT_eX]

[DOI]

Thomas Fahringer

Proceedings of the Parallel Processing and Applied Mathematics, 2017

Interoperability of GASPI and MPI in Large Scale Scientific Applications.

[BibT_eX]

[DOI]

Christian Simmendinger

Proceedings of the Parallel Processing and Applied Mathematics, 2017

RTHMS: a tool for data placement on hybrid memory system.

[BibT_eX]

[DOI]

Proceedings of the 2017 ACM SIGPLAN International Symposium on Memory Management, 2017

Exploring the Performance Benefit of Hybrid Memory System on HPC Environments.

[BibT_eX]

[DOI]

Proceedings of the 2017 IEEE International Parallel and Distributed Processing Symposium Workshops, 2017

Preparing HPC Applications for the Exascale Era: A Decoupling Strategy.

[BibT_eX]

[DOI]

Proceedings of the 46th International Conference on Parallel Processing, 2017

Extending Message Passing Interface Windows to Storage.

[BibT_eX]

[DOI]

Proceedings of the 17th IEEE/ACM International Symposium on Cluster, 2017

2016

Nekbone performance on GPUs with OpenACC and CUDA Fortran implementations.

[BibT_eX]

[DOI]

J. Supercomput., 2016

A Legendre-Fourier spectral method with exact conservation laws for the Vlasov-Poisson system.

[BibT_eX]

[DOI]

J. Comput. Phys., 2016

Momentum conservation in Multi-Level Multi-Domain (MLMD) simulations.

[BibT_eX]

[DOI]

A. Beck

J. Comput. Phys., 2016

The EPiGRAM Project: Preparing Parallel Programming Models for Exascale.

[BibT_eX]

[DOI]

Proceedings of the High Performance Computing, 2016

A Performance Characterization of Streaming Computing on Supercomputers.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Computational Science 2016, 2016

Idle Period Propagation in Message-Passing Applications.

[BibT_eX]

[DOI]

Proceedings of the 18th IEEE International Conference on High Performance Computing and Communications; 14th IEEE International Conference on Smart City; 2nd IEEE International Conference on Data Science and Systems, 2016

Exploring Application Performance on Emerging Hybrid-Memory Supercomputers.

[BibT_eX]

[DOI]

2015

OpenACC acceleration of the Nek5000 spectral element code.

[BibT_eX]

[DOI]

Int. J. High Perform. Comput. Appl., 2015

Introduction of temporal sub-stepping in the Multi-Level Multi-Domain semi-implicit Particle-In-Cell code Parsek2D-MLMD.

[BibT_eX]

[DOI]

Comput. Phys. Commun., 2015

Initial results on computational performance of Intel many integrated core, sandy bridge, and graphical processing unit architectures: implementation of a 1D c++/OpenMP electrostatic particle-in-cell code.

[BibT_eX]

[DOI]

Concurr. Comput. Pract. Exp., 2015

A data streaming model in MPI.

[BibT_eX]

[DOI]

Proceedings of the 3rd Workshop on Exascale MPI, 2015

Spectral Solver for Multi-scale Plasma Physics Simulations with Dynamically Adaptive Number of Moments.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Computational Science, 2015

The Formation of a Magnetosphere with Implicit Particle-in-Cell Simulations.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Computational Science, 2015

The Cost of Synchronizing Imbalanced Processes in Message Passing Systems.

[BibT_eX]

[DOI]

Erwin Laure

Proceedings of the 2015 IEEE International Conference on Cluster Computing, 2015

Evaluation of Parallel Communication Models in Nekbone, a Nek5000 Mini-Application.

[BibT_eX]

[DOI]

Proceedings of the 2015 IEEE International Conference on Cluster Computing, 2015

On the Application Task Granularity and the Interplay with the Scheduling Overhead in Many-Core Shared Memory Systems.

[BibT_eX]

[DOI]

Proceedings of the 2015 IEEE International Conference on Cluster Computing, 2015

2014

The Fluid-Kinetic Particle-in-Cell method for plasma simulations.

[BibT_eX]

[DOI]

J. Comput. Phys., 2014

Two-way coupling of a global Hall magnetohydrodynamics model with a local implicit particle-in-cell model.

[BibT_eX]

[DOI]

Jeremiah U. Brackbill

J. Comput. Phys., 2014

Multi-level multi-domain algorithm implementation for two-dimensional multiscale particle in cell simulations.

[BibT_eX]

[DOI]

A. Beck

J. Comput. Phys., 2014

Nek5000 with OpenACC.

[BibT_eX]

[DOI]

Proceedings of the Solving Software Challenges for Exascale, 2014

2013

A Multi Level Multi Domain Method for Particle In Cell plasma simulations.

[BibT_eX]

[DOI]

J. Comput. Phys., 2013

Space Weather Prediction and Exascale Computing.

[BibT_eX]

[DOI]

Comput. Sci. Eng., 2013

High Performance Solvers for Implicit Particle in Cell Simulation.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Computational Science, 2013

2011

The energy conserving particle-in-cell method.

[BibT_eX]

[DOI]

J. Comput. Phys., 2011

2010

Multi-scale simulations of plasma with iPIC3D.

[BibT_eX]

[DOI]

Rizwan Uddin

Math. Comput. Simul., 2010

Development and performance analysis of a UPC Particle-in-Cell code.

[BibT_eX]

[DOI]

Proceedings of the Fourth Conference on Partitioned Global Address Space Programming Model, 2010

2005

Implementation and performance of a particle-in-cell code written in Java.

[BibT_eX]

[DOI]

Concurr. Pract. Exp., 2005

Plug and Play Approach to Validation of Particle-Based Algorithms.

[BibT_eX]

[DOI]

Proceedings of the Computational Science, 2005

2002

Parsek: object oriented particle in cell. implementation and performance issues.

[BibT_eX]

[DOI]