Stefan Müller

Orcid: 0000-0002-3541-7856

Affiliations:
  • University of Vienna, Austria
  • Austrian Academy of Sciences, Linz, Austria


According to our database1, Stefan Müller authored at least 17 papers between 2006 and 2024.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
Sufficient Conditions for Linear Stability of Complex-Balanced Equilibria in Generalized Mass-Action Systems.
SIAM J. Appl. Dyn. Syst., March, 2024

A SageMath Package for Elementary and Sign Vectors with Applications to Chemical Reaction Networks.
Proceedings of the Mathematical Software - ICMS 2024, 2024

2023
A New Decomposition of the Graph Laplacian and the Binomial Structure of Mass-Action Systems.
J. Nonlinear Sci., October, 2023

2022
Elementary vectors and autocatalytic sets for resource allocation in next-generation models of cellular growth.
PLoS Comput. Biol., 2022

What makes a reaction network "chemical"?
J. Cheminformatics, 2022

2019
On the Bijectivity of Families of Exponential/Generalized Polynomial Maps.
SIAM J. Appl. Algebra Geom., 2019

Flux tope analysis: studying the coordination of reaction directions in metabolic networks.
Bioinform., 2019

2017
From elementary flux modes to elementary flux vectors: Metabolic pathway analysis with arbitrary linear flux constraints.
PLoS Comput. Biol., 2017

2016
Practical Guidelines for Incorporating Knowledge-Based and Data-Driven Strategies into the Inference of Gene Regulatory Networks.
IEEE ACM Trans. Comput. Biol. Bioinform., 2016

Sign Conditions for Injectivity of Generalized Polynomial Maps with Applications to Chemical Reaction Networks and Real Algebraic Geometry.
Found. Comput. Math., 2016

2014
Biochemical Space: A Framework for Systemic Annotation of Biological Models.
Proceedings of the 5th International Workshop on Interactions between Computer Science and Biology, 2014

Generalized Mass-Action Systems and Positive Solutions of Polynomial Equations with Real and Symbolic Exponents.
CoRR, 2014

Elucidating the adaptation and temporal coordination of metabolic pathways using in-silico evolution.
Biosyst., 2014

Generalized Mass-Action Systems and Positive Solutions of Polynomial Equations with Real and Symbolic Exponents (Invited Talk).
Proceedings of the Computer Algebra in Scientific Computing - 16th International Workshop, 2014

2013
A Comprehensive Web-based Platform For Domain-Specific Biological Models.
Proceedings of the fourth International Workshop on Interactions between Computer Science and Biology, 2013

2012
Generalized Mass Action Systems: Complex Balancing Equilibria and Sign Vectors of the Stoichiometric and Kinetic-Order Subspaces.
SIAM J. Appl. Math., 2012

2006
The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks.
Bioinform., 2006


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