Stefan Canzar

According to our database, Stefan Canzar authored at least 37 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Metric multidimensional scaling for large single-cell datasets using neural networks.

Stefan Canzar, Van Hoan Do, Slobodan Jelic, Sören Laue, Domagoj Matijevic, Tomislav Prusina

Algorithms Mol. Biol., December, 2024

Anti Tai mapping for unordered labeled trees.

Mislav Blazevic, Stefan Canzar, Khaled Elbassioni, Domagoj Matijevic

Inf. Process. Lett., March, 2024

2023

Fortuna Detects Novel Splicing in Drosophila scRNASeq Data.

Bartol Borozan, Luka Borozan, Domagoj Severdija, Domagoj Matijevic, Stefan Canzar

Proceedings of the 46th MIPRO ICT and Electronics Convention, 2023

Identifying Cell Types in Single-Cell Multimodal Omics Data via Joint Embedding Learning.

Van Hoan Do, Stefan Canzar

Proceedings of the 15th International Conference on Knowledge and Systems Engineering, 2023

2022

Predicting RNA splicing branchpoints.

Antonio Jovanovic, Israa Alqassem, Nathan Chappell, Stefan Canzar, Domagoj Matijevic

Proceedings of the 45th Jubilee International Convention on Information, 2022

2021

BiCoN: network-constrained biclustering of patients and omics data.

Olga Lazareva, Stefan Canzar, Kevin Yuan, Jan Baumbach, David B. Blumenthal, Paolo Tieri, Tim Kacprowski, Markus List

Bioinform., 2021

2020

Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data.

Shounak Chakraborty, Stefan Canzar, Tobias Marschall, Marcel H. Schulz

J. Comput. Biol., 2020

2019

Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources.

Dinanath Sulakhe, Mark D'Souza, Sheng Wang, Sandhya Balasubramanian, Prashanth Athri, Bingqing Xie, Stefan Canzar, Gady Agam, T. Conrad Gilliam, Natalia Maltsev

Briefings Bioinform., 2019

Dynamic Pseudo-time Warping of Complex Single-Cell Trajectories.

Van Hoan Do, Mislav Blazevic, Pablo Monteagudo, Luka Borozan, Khaled M. Elbassioni, Sören Laue, Francisca Rojas Ringeling, Domagoj Matijevic, Stefan Canzar

Proceedings of the Research in Computational Molecular Biology, 2019

Properties of the generalized Robinson-Foulds metric.

Luka Borozan, Domagoj Matijevic, Stefan Canzar

Proceedings of the 42nd International Convention on Information and Communication Technology, 2019

2018

On the approximability of the maximum interval constrained coloring problem.

Stefan Canzar, Khaled M. Elbassioni, Amr Elmasry, Rajiv Raman

Discret. Optim., 2018

2017

Short Read Mapping: An Algorithmic Tour.

Stefan Canzar, Steven L. Salzberg

Proc. IEEE, 2017

BASIC: BCR assembly from single cells.

Stefan Canzar, Karlynn E. Neu, Qingming Tang, Patrick C. Wilson, Aly A. Khan

Bioinform., 2017

2016

Resolving Conflicting Predictions from Multimapping Reads.

Stefan Canzar, Khaled M. Elbassioni, Mitchell Jones, Julián Mestre

J. Comput. Biol., 2016

ModuleAlign: module-based global alignment of protein-protein interaction networks.

Somaye Hashemifar, Jianzhu Ma, Hammad Naveed, Stefan Canzar, Jinbo Xu

Bioinform., 2016

2015

On Tree-Constrained Matchings and Generalizations.

Stefan Canzar, Khaled M. Elbassioni, Gunnar W. Klau, Julián Mestre

Algorithmica, 2015

CIDANE: Comprehensive Isoform Discovery and Abundance Estimation.

Stefan Canzar, Sandro Andreotti, David Weese, Knut Reinert, Gunnar W. Klau

Proceedings of the Research in Computational Molecular Biology, 2015

2013

A polynomial-delay algorithm for enumerating approximate solutions to the interval constrained coloring problem.

Stefan Canzar, Khaled M. Elbassioni, Julián Mestre

ACM J. Exp. Algorithmics, 2013

Charge Group Partitioning in Biomolecular Simulation.

Stefan Canzar, Mohammed El-Kebir, René Pool, Khaled M. Elbassioni, Alan E. Mark, Daan P. Geerke, Leen Stougie, Gunnar W. Klau

J. Comput. Biol., 2013

The Duplication-Loss Small Phylogeny Problem: From Cherries to Trees.

Sandro Andreotti, Knut Reinert, Stefan Canzar

J. Comput. Biol., 2013

GAGE-B: an evaluation of genome assemblers for bacterial organisms.

Tanja Magoc, Stephan Pabinger, Stefan Canzar, Xinyue Liu, Qi Su, Daniela Puiu, Luke J. Tallon, Steven L. Salzberg

Bioinform., 2013

The Generalized Robinson-Foulds Metric.

Sebastian Böcker, Stefan Canzar, Gunnar W. Klau

Proceedings of the Algorithms in Bioinformatics - 13th International Workshop, 2013

2012

A Branch-and-Cut Algorithm for the 2-Species Duplication-Loss Phylogeny Problem

Stefan Canzar, Sandro Andreotti

CoRR, 2012

CLEVER: clique-enumerating variant finder.

Tobias Marschall, Ivan G. Costa, Stefan Canzar, Markus Bauer, Gunnar W. Klau, Alexander Schliep, Alexander Schönhuth

Bioinform., 2012

Charge Group Partitioning in Biomolecular Simulation.

Stefan Canzar, Mohammed El-Kebir, René Pool, Khaled M. Elbassioni, Alpeshkumar K. Malde, Alan E. Mark, Daan P. Geerke, Leen Stougie, Gunnar W. Klau

Proceedings of the Research in Computational Molecular Biology, 2012

Solving the Minimum String Cover Problem.

Stefan Canzar, Tobias Marschall, Sven Rahmann, Chris Schwiegelshohn

Proceedings of the 14th Meeting on Algorithm Engineering & Experiments, 2012

2011

An exact algorithm for side-chain placement in protein design.

Stefan Canzar, Nora C. Toussaint, Gunnar W. Klau

Optim. Lett., 2011

Approximation Algorithms for the Interval Constrained Coloring Problem.

Ernst Althaus, Stefan Canzar, Khaled M. Elbassioni, Andreas Karrenbauer, Julián Mestre

Algorithmica, 2011

A Mathematical Programming Approach to Marker-Assisted Gene Pyramiding.

Stefan Canzar, Mohammed El-Kebir

Proceedings of the Algorithms in Bioinformatics - 11th International Workshop, 2011

2010

Computing H/D-Exchange rates of single residues from data of proteolytic fragments.

Ernst Althaus, Stefan Canzar, Carsten Ehrler, Mark R. Emmett, Andreas Karrenbauer, Alan G. Marshall, Anke Meyer-Bäse, Jeremiah D. Tipton, Huimin Zhang

BMC Bioinform., 2010

2009

Discrete Fitting of Hydrogen-Deuterium-Exchange-data of Overlapping Fragments.

Ernst Althaus, Stefan Canzar, Carsten Ehrler, Mark R. Emmett, Andreas Karrenbauer, Alan G. Marshall, Anke Meyer-Bäse, Jeremiah Tiptopn, Huimin Zhang

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009

2008

Lagrangian Relaxation - Solving NP-hard Problems in Computational Biology via Combinatorial Optimization.

Stefan Canzar

PhD thesis, 2008

A Lagrangian relaxation approach for the multiple sequence alignment problem.

Ernst Althaus, Stefan Canzar

J. Comb. Optim., 2008

Approximating the Interval Constrained Coloring Problem.

Ernst Althaus, Stefan Canzar, Khaled M. Elbassioni, Andreas Karrenbauer, Julián Mestre

Proceedings of the Algorithm Theory, 2008

Computing H/D-exchange speeds of single residues from data of peptic fragments.

Ernst Althaus, Stefan Canzar, Mark R. Emmett, Andreas Karrenbauer, Alan G. Marshall, Anke Meyer-Bäse, Huimin Zhang

Proceedings of the 2008 ACM Symposium on Applied Computing (SAC), 2008

LASA: A Tool for Non-heuristic Alignment of Multiple Sequences.

Ernst Althaus, Stefan Canzar

Proceedings of the Bioinformatics Research and Development, 2008

2006

Shape Distributions and Protein Similarity.

Stefan Canzar, Jan Remy

Proceedings of the German Conference on Bioinformatics GCB 2006, 19.09. 2006, 2006