Sophia Kossida

According to our database, Sophia Kossida authored at least 34 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy.

Karina Martinez, Jon Agirre, Yukie Akune, Kiyoko F. Aoki-Kinoshita, Cecilia N. Arighi, Kristian B. Axelsen, Evan Bolton, Emily Bordeleau, Nathan J. Edwards, Elisa Fadda, Ten Feizi, Catherine A. Hayes, Callum M. Ives, Hiren J. Joshi, Khakurel Krishna Prasad, Sofia Kossida, Frédérique Lisacek, Yan Liu, Thomas Lütteke, Junfeng Ma, Adnan Malik, Maria Jesus Martin, Akul Y. Mehta, Sriram Neelamegham, Kalpana Panneerselvam, René Ranzinger, Sylvie Ricard-Blum, Gaoussou Sanou, Vijay Shanker, Paul D. Thomas, Michael Tiemeyer, James Urban, Randi Vita, Jeet Vora, Yasunori Yamamoto, Raja Mazumder

Database J. Biol. Databases Curation, January, 2024

IMGT/RobustpMHC: robust training for class-I MHC peptide binding prediction.

Anjana Kushwaha, Patrice Duroux, Véronique Giudicelli, Konstantin Todorov, Sofia Kossida

Briefings Bioinform., 2024

2022

IMGT® databases, related tools and web resources through three main axes of research and development.

Taciana Manso, Géraldine Folch, Véronique Giudicelli, Joumana Jabado-Michaloud, Anjana Kushwaha, Viviane Nguefack Ngoune, Maria Georga, Ariadni Papadaki, Chahrazed Debbagh, Perrine Pégorier, Morgane Bertignac, Saida Hadi-Saljoqi, Imène Chentli, Karima Cherouali, Safa Aouinti, Amar El Hamwi, Alexandre Albani, Merouane Elazami Elhassani, Benjamin Viart, Agathe Goret, Anna Tran, Gaoussou Sanou, Maël Rollin, Patrice Duroux, Sofia Kossida

Nucleic Acids Res., 2022

IMGT-KG: A Knowledge Graph for Immunogenetics.

Gaoussou Sanou, Véronique Giudicelli, Nika Abdollahi, Sofia Kossida, Konstantin Todorov, Patrice Duroux

Proceedings of the Semantic Web - ISWC 2022, 2022

2017

Advanced Protein Alignments Based on Sequence, Structure and Hydropathy Profiles; The Paradigm of the Viral Polymerase Enzyme.

Dimitrios Vlachakis, Alexandros Armaos, Sophia Kossida

Math. Comput. Sci., 2017

2015

IMGT^®, the international ImMunoGeneTics information system^® 25 years on.

Marie-Paule Lefranc, Véronique Giudicelli, Patrice Duroux, Joumana Jabado-Michaloud, Géraldine Folch, Safa Aouinti, Emilie Carillon, Hugo Duvergey, Amélie Houles, Typhaine Paysan-Lafosse, Saida Hadi-Saljoqi, Souphatta Sasorith, Gérard Lefranc, Sofia Kossida

Nucleic Acids Res., 2015

2014

Evolution of the F₀F₁ ATP Synthase Complex in Light of the Patchy Distribution of Different Bioenergetic Pathways across Prokaryotes.

Vassiliki Lila Koumandou, Sophia Kossida

PLoS Comput. Biol., 2014

A Data Mining Based Approach for Collaborative Analysis of Biomedical Data.

Georgia Tsiliki, Sophia Kossida, Natalja Friesen, Stefan Rüping, Manolis Tzagarakis, Nikos I. Karacapilidis

Int. J. Artif. Intell. Tools, 2014

ASSP; the Antibody Secondary Structure Profile search tool.

Dimitrios Vlachakis, Alexandros Armaos, Ioannis Kasampalidis, Arianna Filntisi, Sophia Kossida

Proceedings of the 2nd International Conference on Algorithms for Big Data , 2014

2013

Space Constrained Homology Modelling: The Paradigm of the RNA-Dependent RNA Polymerase of Dengue (Type II) Virus.

Dimitrios Vlachakis, Dimitrios-Georgios Kontopoulos, Sophia Kossida

Comput. Math. Methods Medicine, 2013

Antibody Drug Conjugate Bioinformatics: Drug Delivery through the Letterbox.

Dimitrios Vlachakis, Sophia Kossida

Comput. Math. Methods Medicine, 2013

Introducing Drugster: a comprehensive and fully integrated drug design, lead and structure optimization toolkit.

Dimitrios Vlachakis, Dimosthenis Tsagkrasoulis, Vasileios Megalooikonomou, Sophia Kossida

Bioinform., 2013

State-of-the-art technology in modern computer-aided drug design.

Georgios A. Dalkas, Dimitrios Vlachakis, Dimosthenis Tsagkrasoulis, Anastasia N. Kastania, Sophia Kossida

Briefings Bioinform., 2013

3D Molecular Modelling of the Helicase Enzyme of the Endemic, Zoonotic Greek Goat Encephalitis Virus.

Dimitrios Vlachakis, Georgia Tsiliki, Sophia Kossida

Proceedings of the Engineering Applications of Neural Networks, 2013

2012

Gappi: Identifying Important protein Modules through protein-protein Interaction Graphs.

Charalampos N. Moschopoulos, Marios Fytros, Stamatis Alatsathianos, Spiridon D. Likothanassis, Sophia Kossida

Int. J. Artif. Intell. Tools, 2012

Data Mining Based Collaborative Analysis of Microarray Data.

Georgia Tsiliki, Sophia Kossida, Natalja Friesen, Stefan Rüping, Manolis Tzagarakis, Nikos I. Karacapilidis

Proceedings of the IEEE 24th International Conference on Tools with Artificial Intelligence, 2012

2011

A Computer-Based Technique for Automated Spot Detection in Proteomics Images.

Eleftheria A. Mylona, Michalis A. Savelonas, Dimitris Maroulis, Sophia Kossida

IEEE Trans. Inf. Technol. Biomed., 2011

Noise reduction in protein-protein interaction graphs by the implementation of a novel weighting scheme.

George D. Kritikos, Charalampos N. Moschopoulos, Michalis Vazirgiannis, Sophia Kossida

BMC Bioinform., 2011

Compositional perspectives on human brain aging.

Stilianos Arhondakis, Sophia Kossida

Biosyst., 2011

Using graph theory to analyze biological networks.

Georgios A. Pavlopoulos, Maria Secrier, Charalampos N. Moschopoulos, Theodoros G. Soldatos, Sophia Kossida, Jan Aerts, Reinhard Schneider, Pantelis G. Bagos

BioData Min., 2011

Optimizing Filter Processes on Protein Interaction Clustering Results Using Genetic Algorithms.

Charalampos N. Moschopoulos, Grigorios N. Beligiannis, Sophia Kossida, Spiridon D. Likothanassis

Proceedings of the Engineering Applications of Neural Networks, 2011

2010

Development and Evaluation of a Web-Based Personal Electronic Health Record (pEHR).

Vasileios G. Stamatopoulos, George E. Karagiannis, Michael L. Rigby, Sophia Kossida

Proceedings of the Web-Based Applications in Healthcare and Biomedicine, 2010

e-Herophilus: 24-hour personalised telecardiology services.

Anastasia N. Kastania, George Loudos, Nicholas P. Sgouros, Ioannis Constantinou, Maria Vavatsioula, Harisios Boudoulas, Sophia Kossida

Int. J. Electron. Heal., 2010

A Spot Segmentation Approach for 2D Gel Electrophoresis Images Based on 2D Histograms.

Eleni Zacharia, Eirini Kostopoulou, Dimitris Maroulis, Sophia Kossida

Proceedings of the 20th International Conference on Pattern Recognition, 2010

2009

Proteomic Feature Maps: A new visualization approach in proteomics analysis.

Eugenia G. Giannopoulou, Spiros D. Garbis, Antonia Vlahou, Sofia Kossida, George Lepouras, Elias S. Manolakos

J. Biomed. Informatics, 2009

'Brukin2D': a 2D visualization and comparison tool for LC-MS data.

Dimosthenis Tsagkrasoulis, Panagiotis Zerefos, George Loudos, Antonia Vlahou, Marc Baumann, Sophia Kossida

BMC Bioinform., 2009

Human microRNA target analysis and gene ontology clustering by GOmir, a novel stand-alone application.

Maria G. Roubelakis, Pantelis Zotos, Georgios Papachristoudis, Ioannis Michalopoulos, Kalliopi I. Pappa, Nicholas P. Anagnou, Sophia Kossida

BMC Bioinform., 2009

GIBA: a clustering tool for detecting protein complexes.

Charalampos N. Moschopoulos, Georgios A. Pavlopoulos, Reinhard Schneider, Spiridon D. Likothanassis, Sophia Kossida

BMC Bioinform., 2009

The 20^th anniversary of EMBnet: 20 years of bioinformatics for the Life Sciences community.

Domenica D'Elia, Andreas Gisel, Nils-Einar Eriksson, Sophia Kossida, Kimmo Mattila, Lubos Klucar, Erik Bongcam-Rudloff

BMC Bioinform., 2009

jClust: a clustering and visualization toolbox.

Georgios A. Pavlopoulos, Charalampos N. Moschopoulos, Sean D. Hooper, Reinhard Schneider, Sophia Kossida

Bioinform., 2009

2008

A Biosignal Classification Neural Modeling Methodology for Intelligent Hardware Construction.

Anastasia N. Kastania, Stelios Zimeras, Sophia Kossida

Proceedings of the New Directions in Intelligent Interactive Multimedia, 2008

Identification and analysis of mammalian KLK6 orthologue genes for prediction of physiological substrates.

Georgios Pampalakis, Maria Arampatzidou, Grigoris D. Amoutzias, Sofia Kossida, Georgia Sotiropoulou

Comput. Biol. Chem., 2008

GOmir: A stand-alone application for human microRNA target analysis and gene ontology clustering.

Pantelis Zotos, Georgios Papachristoudis, Maria G. Roubelakis, Ioannis Michalopoulos, Kalliopi I. Pappa, Nicholas P. Anagnou, Sophia Kossida

Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

An enhanced Markov clustering method for detecting protein complexes.

Charalampos N. Moschopoulos, Georgios A. Pavlopoulos, Spiridon D. Likothanassis, Sofia Kossida

Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008