Sophia J. Wagner

According to our database, Sophia J. Wagner authored at least 13 papers between 2021 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis.

Guillaume Jaume, Paul Doucet, Andrew H. Song, Ming Y. Lu, Cristina Almagro-Pérez, Sophia J. Wagner, Anurag J. Vaidya, Richard J. Chen, Drew F. K. Williamson, Ahrong Kim, Faisal Mahmood

CoRR, 2024

Using histopathology latent diffusion models as privacy-preserving dataset augmenters improves downstream classification performance.

Jan Moritz Niehues, Gustav Müller-Franzes, Yoni Schirris, Sophia J. Wagner, Michael Jendrusch, Matthias Kloor, Alexander T. Pearson, Hannah Sophie Muti, Katherine Jane Hewitt, Gregory Patrick Veldhuizen, Laura Zigutyte, Daniel Truhn, Jakob Nikolas Kather

Comput. Biol. Medicine, 2024

DinoBloom: A Foundation Model for Generalizable Cell Embeddings in Hematology.

Valentin Koch, Sophia J. Wagner, Salome Kazeminia, Ece Sancar, Matthias Hehr, Julia A. Schnabel, Tingying Peng, Carsten Marr

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

Low-Resource Finetuning of Foundation Models Beats State-of-the-Art in Histopathology.

Benedikt Roth, Valentin Koch, Sophia J. Wagner, Julia A. Schnabel, Carsten Marr, Tingying Peng

Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

2023

From Whole-slide Image to Biomarker Prediction: A Protocol for End-to-End Deep Learning in Computational Pathology.

Omar S. M. El Nahhas, Marko van Treeck, Georg Wölflein, Michaela Unger, Marta Ligero, Tim Lenz, Sophia J. Wagner, Katherine Jane Hewitt, Firas Khader, Sebastian Foersch, Daniel Truhn, Jakob Nikolas Kather

CoRR, 2023

Fully transformer-based biomarker prediction from colorectal cancer histology: a large-scale multicentric study.

Sophia J. Wagner, Daniel Reisenbüchler, Nicholas P. West, Jan Moritz Niehues, Gregory Patrick Veldhuizen, Philip Quirke, Heike Irmgard Grabsch, Piet A. van den Brandt, Gordon G. A. Hutchins, Susan D. Richman, Tanwei Yuan, Rupert Langer, Josien Christina Anna Jenniskens, Kelly Offermans, Wolfram Müller, Richard Gray, Stephen B. Gruber, Joel K. Greenson, Gad Rennert, Joseph D. Bonner, Daniel Schmolze, Jacqueline A. James, Maurice B. Loughrey, Manuel Salto-Tellez, Hermann Brenner, Michael Hoffmeister, Daniel Truhn, Julia A. Schnabel, Melanie Boxberg, Tingying Peng, Jakob Nikolas Kather

CoRR, 2023

B-Cos Aligned Transformers Learn Human-Interpretable Features.

Manuel Tran, Amal Lahiani, Yashin Dicente Cid, Melanie Boxberg, Peter Lienemann, Christian Matek, Sophia J. Wagner, Fabian J. Theis, Eldad Klaiman, Tingying Peng

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

Approaching Peak Ground Truth.

Florian Kofler, Johannes Wahle, Ivan Ezhov, Sophia J. Wagner, Rami Al-Maskari, Emilia Gryska, Mihail I. Todorov, Christina Bukas, Felix Meissen, Tingying Peng, Ali Ertürk, Daniel Rueckert, Rolf A. Heckemann, Jan Kirschke, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze, Marie Piraud

Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

2022

Multi-Modality Microscopy Image Style Augmentation for Nuclei Segmentation.

Ye Liu, Sophia J. Wagner, Tingying Peng

J. Imaging, 2022

S5CL: Unifying Fully-Supervised, Self-supervised, and Semi-supervised Learning Through Hierarchical Contrastive Learning.

Manuel Tran, Sophia J. Wagner, Melanie Boxberg, Tingying Peng

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

Local Attention Graph-Based Transformer for Multi-target Genetic Alteration Prediction.

Daniel Reisenbüchler, Sophia J. Wagner, Melanie Boxberg, Tingying Peng

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

2021

Multi-Modality Microscopy Image Style Transfer for Nuclei Segmentation.

Ye Liu, Sophia J. Wagner, Tingying Peng

CoRR, 2021

Structure-Preserving Multi-domain Stain Color Augmentation Using Style-Transfer with Disentangled Representations.

Sophia J. Wagner, Nadieh Khalili, Raghav Sharma, Melanie Boxberg, Carsten Marr, Walter de Back, Tingying Peng

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021