Sook Jung

According to our database, Sook Jung authored at least 22 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Genotype and phenotype data standardization, utilization and integration in the big data era for agricultural sciences.

Cecilia H. Deng, Sushma Naithani, Sunita Kumari, Irene Cobo-Simón, Elsa H. Quezada-Rodríguez, Mária Skrabisová, Nick Gladman, Melanie J. Correll, Akeem Babatunde Sikiru, Olusola O. Afuwape, Annarita Marrano, Ines Rebollo, Wentao Zhang, Sook Jung

Database J. Biol. Databases Curation, 2023

2021

The Breeding Information Management System (BIMS): an online resource for crop breeding.

Sook Jung, Taein Lee, Ksenija Gasic, B. Todd Campbell, Jing Yu, Jodi L. Humann, Sushan Ru, Daniel Edge-Garza, Heidi Hough, Dorrie Main

Database J. Biol. Databases Curation, 2021

Tripal MegaSearch: a tool for interactive and customizable query and download of big data.

Sook Jung, Chun-Huai Cheng, Katheryn Buble, Taein Lee, Jodi L. Humann, Jing Yu, James Crabb, Heidi Hough, Dorrie Main

Database J. Biol. Databases Curation, 2021

Tripal, a community update after 10 years of supporting open source, standards-based genetic, genomic and breeding databases.

Margaret Staton, Ethalinda Cannon, Lacey-Anne Sanderson, Jill L. Wegrzyn, Tavis K. Anderson, Sean Buehler, Irene Cobo-Simón, Kay Faaberg, Emily S. Grau, Valentin Guignon, Jessica Gunoskey, Blake Inderski, Sook Jung, Kelly Lager, Dorrie Main, Monica Poelchau, Risharde Ramnath, Peter Richter, Joe West, Stephen P. Ficklin

Briefings Bioinform., 2021

2020

Tripal and Galaxy: supporting reproducible scientific workflows for community biological databases.

Shawna Spoor, Connor Wytko, Brian Soto, Ming Chen, Abdullah Almsaeed, Bradford Condon, Nic Herndon, Heidi Hough, Sook Jung, Meg Staton, Jill L. Wegrzyn, Dorrie Main, F. Alex Feltus, Stephen P. Ficklin

Database J. Biol. Databases Curation, 2020

2019

15 years of GDR: New data and functionality in the Genome Database for Rosaceae.

Sook Jung, Taein Lee, Chun-Huai Cheng, Katheryn Buble, Ping Zheng, Jing Yu, Jodi L. Humann, Stephen P. Ficklin, Ksenija Gasic, Kristin Scott, Morgan Frank, Sushan Ru, Heidi Hough, Kate Evans, Cameron Peace, Mercy A. Olmstead, Lisa W. DeVetter, James McFerson, Michael Coe, Jill L. Wegrzyn, Margaret E. Staton, Albert G. Abbott, Dorrie Main

Nucleic Acids Res., 2019

Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases.

Shawna Spoor, Chun-Huai Cheng, Lacey-Anne Sanderson, Bradford Condon, Abdullah Almsaeed, Ming Chen, Anthony Bretaudeau, Helena Rasche, Sook Jung, Dorrie Main, Kirstin E. Bett, Margaret Staton, Jill L. Wegrzyn, F. Alex Feltus, Stephen P. Ficklin

Database J. Biol. Databases Curation, 2019

Growing and cultivating the forest genomics database, TreeGenes.

Taylor Falk, Nic Herndon, Emily S. Grau, Sean Buehler, Peter Richter, Sumaira Zaman, Eliza M. Baker, Risharde Ramnath, Stephen P. Ficklin, Margaret Staton, Frank Alex Feltus, Sook Jung, Doreen Main, Jill L. Wegrzyn

Database J. Biol. Databases Curation, 2019

Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps.

Katheryn Buble, Sook Jung, Jodi L. Humann, Jing Yu, Chun-Huai Cheng, Taein Lee, Stephen P. Ficklin, Heidi Hough, Bradford Condon, Margaret E. Staton, Jill L. Wegrzyn, Dorrie Main

Database J. Biol. Databases Curation, 2019

2018

Association Mapping for Forest Trees with CartograTree.

Nic Herndon, Taylor Falk, Emily S. Grau, Sook Jung, Stephen P. Ficklin, Dorrie Main, Margaret E. Staton, Jill L. Wegrzyn

Proceedings of the Application of Semantic Technology in Biodiversity Science, 2018

AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.

Lisa C. Harper, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Sook Jung, Monica Poelchau, Ramona L. Walls, Carson M. Andorf, Elizabeth Arnaud, Tanya Z. Berardini, Clayton L. Birkett, Steven B. Cannon, James D. Carson, Bradford Condon, Laurel Cooper, Nathan A. Dunn, Christine G. Elsik, Andrew D. Farmer, Stephen P. Ficklin, David M. Grant, Emily S. Grau, Nic Herndon, Zhi-Liang Hu, Jodi L. Humann, Pankaj Jaiswal, Clément Jonquet, Marie-Angélique Laporte, Pierre Larmande, Gerard R. Lazo, Fiona McCarthy, Naama Menda, Christopher J. Mungall, Monica C. Munoz-Torres, Sushma Naithani, Rex T. Nelson, Daureen Nesdill, Carissa A. Park, James M. Reecy, Leonore Reiser, Lacey-Anne Sanderson, Taner Z. Sen, Margaret Staton, Sabarinath Subramaniam, Marcela Karey Tello-Ruiz, Victor Unda, Deepak R. Unni, Liya Wang, Doreen Ware, Jill L. Wegrzyn, Jason Williams, Margaret Woodhouse, Jing Yu, Doreen Main

Database J. Biol. Databases Curation, 2018

2017

Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases.

Sook Jung, Taein Lee, Chun-Huai Cheng, Stephen P. Ficklin, Jing Yu, Jodi L. Humann, Dorrie Main

Database J. Biol. Databases Curation, 2017

2016

Chado use case: storing genomic, genetic and breeding data of Rosaceae and Gossypium crops in Chado.

Sook Jung, Taein Lee, Stephen P. Ficklin, Jing Yu, Chun-Huai Cheng, Dorrie Main

Database J. Biol. Databases Curation, 2016

2014

CottonGen: a genomics, genetics and breeding database for cotton research.

Jing Yu, Sook Jung, Chun-Huai Cheng, Stephen P. Ficklin, Taein Lee, Ping Zheng, Don Jones, Richard G. Percy, Dorrie Main

Nucleic Acids Res., 2014

The Genome Database for Rosaceae (GDR): year 10 update.

Sook Jung, Stephen P. Ficklin, Taein Lee, Chun-Huai Cheng, Anna Blenda, Ping Zheng, Jing Yu, Aureliano Bombarely, Ilhyung Cho, Sushan Ru, Kate Evans, Cameron Peace, Albert G. Abbott, Lukas A. Mueller, Mercy A. Olmstead, Dorrie Main

Nucleic Acids Res., 2014

2013

Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases.

Lacey-Anne Sanderson, Stephen P. Ficklin, Chun-Huai Cheng, Sook Jung, F. Alex Feltus, Kirstin E. Bett, Dorrie Main

Database J. Biol. Databases Curation, 2013

Addition of a breeding database in the Genome Database for Rosaceae.

Kate Evans, Sook Jung, Taein Lee, Lisa Brutcher, Ilhyung Cho, Cameron Peace, Dorrie Main

Database J. Biol. Databases Curation, 2013

2011

The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data.

Sook Jung, Naama Menda, Seth Redmond, Robert M. Buels, Maren Friesen, Yuri R. Bendaña, Lacey-Anne Sanderson, Hilmar Lapp, Taein Lee, Bob MacCallum, Kirstin E. Bett, Scott Cain, Dave Clements, Lukas A. Mueller, Dorrie Main

Database J. Biol. Databases Curation, 2011

Tripal: a construction toolkit for online genome databases.

Stephen P. Ficklin, Lacey-Anne Sanderson, Chun-Huai Cheng, Margaret Staton, Taein Lee, Ilhyung Cho, Sook Jung, Kirstin E. Bett, Doreen Main

Database J. Biol. Databases Curation, 2011

GenSAS - An online integrated genome sequence annotation pipeline.

Taein Lee, Cameron Peace, Sook Jung, Ping Zheng, Dorrie Main, Ilhyung Cho

Proceedings of the 4th International Conference on Biomedical Engineering and Informatics, 2011

2008

GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data.

Sook Jung, Margaret Staton, Taein Lee, Anna Blenda, Randall Svancara, Albert G. Abbott, Dorrie Main

Nucleic Acids Res., 2008

2004

GDR (<i>G</i>enome <i>D</i>atabase for <i>R</i>osaceae): integrated web resources for Rosaceae genomics and genetics research.

Sook Jung, Christopher Jesudurai, Margaret Staton, Zhidian Du, Stephen P. Ficklin, Ilhyung Cho, Albert G. Abbott, Jeffrey Tomkins, Dorrie Main

BMC Bioinform., 2004