Sonja J. Prohaska

According to our database, Sonja J. Prohaska authored at least 25 papers between 2004 and 2016.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2016

Design specifications for cellular regulation.

David C. Krakauer, Lydia Müller, Sonja J. Prohaska, Peter F. Stadler

Theory Biosci., 2016

The paralog-to-contig assignment problem: high quality gene models from fragmented assemblies.

Henrike Indrischek, Nicolas Wieseke, Peter F. Stadler, Sonja J. Prohaska

Algorithms Mol. Biol., 2016

2015

Algebraic Dynamic Programming over general data structures.

Christian Höner zu Siederdissen, Sonja J. Prohaska, Peter F. Stadler

BMC Bioinform., December, 2015

The relativity of biological function.

Manfred D. Laubichler, Peter F. Stadler, Sonja J. Prohaska, Katja Nowick

Theory Biosci., 2015

2014

Analyzing Chromatin Using Tiled Binned Scatterplot Matrices.

Dirk Zeckzer, Daniel Gerighausen, Lydia Steiner, Sonja J. Prohaska

CoRR, 2014

A priori assessment of data quality in molecular phylogenetics.

Bernhard Misof, Karen Meusemann, Björn Marcus von Reumont, Patrick Kück, Sonja J. Prohaska, Peter F. Stadler

Algorithms Mol. Biol., 2014

Dynamic Programming for Set Data Types.

Christian Höner zu Siederdissen, Sonja J. Prohaska, Peter F. Stadler

Proceedings of the Advances in Bioinformatics and Computational Biology, 2014

Comparative Detection of Processed Small RNAs in Archaea.

Christian Höner zu Siederdissen, Sarah Berkemer, Fabian Amman, Axel Wintsche, Sebastian Will, Sonja J. Prohaska, Peter F. Stadler

Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014

2011

Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis.

Marcus Lechner, Sven Findeiß, Lydia Steiner, Manja Marz, Peter F. Stadler, Sonja J. Prohaska

BMC Bioinform., 2011

Phylogenetic Footprinting and Consistent Sets of Local Aligments.

Wolfgang Otto, Peter F. Stadler, Sonja J. Prohaska

Proceedings of the Combinatorial Pattern Matching - 22nd Annual Symposium, 2011

2010

Detection of Protein Domains in Eukaryotic Genome Sequences.

Arli A. Parikesit, Peter F. Stadler, Sonja J. Prohaska

Proceedings of the Advances in Bioinformatics and Computational Biology, 2010

Quantitative Comparison of Genomic-Wide Protein Domain Distributions.

Arli A. Parikesit, Peter F. Stadler, Sonja J. Prohaska

Proceedings of the German Conference on Bioinformatics 2010, 2010

2009

Defining genes: a computational framework.

Peter F. Stadler, Sonja J. Prohaska, Christian V. Forst, David C. Krakauer

Theory Biosci., 2009

Discovering cis-regulatory modules by optimizing barbecues.

Axel Mosig, Türker Bíyíkoglu, Sonja J. Prohaska, Peter F. Stadler

Discret. Appl. Math., 2009

Automatic Classification of Embryonic Fruit Fly Gene Expression Patterns.

Andreas Heffel, Sonja J. Prohaska, Peter F. Stadler, Gerhard Kauer, Jens-Peer Kuska

Proceedings of the Bildverarbeitung für die Medizin 2009: Algorithmen - Systeme, 2009

2008

"Genes".

Sonja J. Prohaska, Peter F. Stadler

Theory Biosci., 2008

SynBlast: Assisting the analysis of conserved synteny information.

Jörg Lehmann, Peter F. Stadler, Sonja J. Prohaska

BMC Bioinform., 2008

Noisy: Identification of problematic columns in multiple sequence alignments.

Andreas W. M. Dress, Christoph Flamm, Guido Fritzsch, Stefan Grünewald, Matthias Kruspe, Sonja J. Prohaska, Peter F. Stadler

Algorithms Mol. Biol., 2008

Process flow for classification and clustering of fruit fly gene expression patterns.

Andreas Heffel, Peter F. Stadler, Sonja J. Prohaska, Gerhard Kauer, Jens-Peer Kuska

Proceedings of the International Conference on Image Processing, 2008

2006

Multiple sequence alignment with user-defined anchor points.

Burkhard Morgenstern, Sonja J. Prohaska, Dirk Pöhler, Peter F. Stadler

Algorithms Mol. Biol., 2006

2005

Evolutionary patterns of non-coding RNAs.

Athanasius F. Bompfünewerer, Christoph Flamm, Claudia Fried, Guido Fritzsch, Ivo L. Hofacker, Jörg Lehmann, Kristin Missal, Axel Mosig, Bettina Müller, Sonja J. Prohaska, Bärbel M. R. Stadler, Peter F. Stadler, Andrea Tanzer, Stefan Washietl, Christina Witwer

Theory Biosci., 2005

Multiple sequence alignment with user-defined constraints at GOBICS.

Burkhard Morgenstern, Nadine Werner, Sonja J. Prohaska, Rasmus Steinkamp, Isabelle Schneider, Amarendran Ramaswami Subramanian, Peter F. Stadler, Jan Weyer-Menkhoff

Bioinform., 2005

2004

The duplication of the <i>Hox</i> gene clusters in teleost fishes.

Sonja J. Prohaska, Peter F. Stadler

Theory Biosci., 2004

The Footprint Sorting Problem.

Claudia Fried, Wim Hordijk, Sonja J. Prohaska, Claus R. Stadler, Peter F. Stadler

J. Chem. Inf. Model., 2004

Multiple sequence alignment with user-defined constraints.

Burkhard Morgenstern, Sonja J. Prohaska, Nadine Werner, Jan Weyer-Menkhoff, Isabelle Schneider, Amarendran Ramaswami Subramanian, Peter F. Stadler

Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, 2004