Songjian Lu

Orcid: 0000-0002-6976-9294

According to our database1, Songjian Lu authored at least 25 papers between 2004 and 2021.

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Bibliography

2021
ORN: Inferring patient-specific dysregulation status of pathway modules in cancer with OR-gate Network.
PLoS Comput. Biol., 2021

2020
BEM: Mining Coregulation Patterns in Transcriptomics via Boolean Matrix Factorization.
Bioinform., 2020

2019
Systematic discovery of the functional impact of somatic genome alterations in individual tumors through tumor-specific causal inference.
PLoS Comput. Biol., 2019

Noisy and Incomplete Boolean Matrix Factorizationvia Expectation Maximization.
CoRR, 2019

Integrating data and knowledge to identify functional modules of genes: a multilayer approach.
BMC Bioinform., 2019

Prediction of lncRNA-disease associations by integrating diverse heterogeneous information sources with RWR algorithm and positive pointwise mutual information.
BMC Bioinform., 2019

2016
An exact algorithm for finding cancer driver somatic genome alterations: the weighted mutually exclusive maximum set cover problem.
Algorithms Mol. Biol., 2016

2015
Identifying Driver Genomic Alterations in Cancers by Searching Minimum-Weight, Mutually Exclusive Sets.
PLoS Comput. Biol., 2015

2014
An exact algorithm for the weighed mutually exclusive maximum set cover problem.
CoRR, 2014

2013
An exact algorithm with the time complexity of $O^*(1.299^m)$ for the weighed mutually exclusive set cover problem
CoRR, 2013

Using graph model to find transcription factor modules: the hitting set problem and an exact algorithm.
Algorithms Mol. Biol., 2013

2012
Iterative Expansion and Color Coding: An Improved Algorithm for 3D-Matching.
ACM Trans. Algorithms, 2012

2011
Improved deterministic algorithms for weighted matching and packing problems.
Theor. Comput. Sci., 2011

A graph model and an exact algorithm for finding transcription factor modules.
Proceedings of the ACM International Conference on Bioinformatics, 2011

2009
An Improved Parameterized Algorithm for the Minimum Node Multiway Cut Problem.
Algorithmica, 2009

Improved Parameterized Set Splitting Algorithms: A Probabilistic Approach.
Algorithmica, 2009

Improved Deterministic Algorithms for Weighted Matching and Packing Problems.
Proceedings of the Theory and Applications of Models of Computation, 6th Annual Conference, 2009

2008
Improved algorithms for feedback vertex set problems.
J. Comput. Syst. Sci., 2008

A fixed-parameter algorithm for the directed feedback vertex set problem.
J. ACM, 2008

2007
Finding Pathway Structures in Protein Interaction Networks.
Algorithmica, 2007

Improved algorithms for path, matching, and packing problems.
Proceedings of the Eighteenth Annual ACM-SIAM Symposium on Discrete Algorithms, 2007

Directed Feedback Vertex Set Problem is FPT.
Proceedings of the Structure Theory and FPT Algorithmics for Graphs, Digraphs and Hypergraphs, 08.07., 2007

Improved Algorithms for Weighted and Unweighted Set Splitting Problems.
Proceedings of the Computing and Combinatorics, 13th Annual International Conference, 2007

2006
Greedy Localization and Color-Coding: Improved Matching and Packing Algorithms.
Proceedings of the Parameterized and Exact Computation, Second International Workshop, 2006

2004
Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding.
Proceedings of the Algorithms in Bioinformatics, 4th International Workshop, 2004


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