Sohrab P. Shah

According to our database, Sohrab P. Shah authored at least 21 papers between 2003 and 2020.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2020

Epiclomal: Probabilistic clustering of sparse single-cell DNA methylation data.

Camila P. E. de Souza, Mirela Andronescu, Tehmina Masud, Farhia Kabeer, Justina Biele, Emma Laks, Daniel Lai, Patricia Ye, Jazmine Brimhall, Beixi Wang, Edmund Su, Tony Hui, Qi Cao, Marcus Wong, Michelle Moksa, Richard A. Moore, Martin Hirst, Samuel Aparicio, Sohrab P. Shah

PLoS Comput. Biol., 2020

2019

Integrated structural variation and point mutation signatures in cancer genomes using correlated topic models.

Tyler Funnell, Allen W. Zhang, Diljot Grewal, Steven McKinney, Ali Bashashati, Yi Kan Wang, Sohrab P. Shah

PLoS Comput. Biol., 2019

12 Grand Challenges in Single-Cell Data Science.

David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth

PeerJ Prepr., 2019

2016

densityCut: an efficient and versatile topological approach for automatic clustering of biological data.

Jiarui Ding, Sohrab P. Shah, Anne Condon

Bioinform., 2016

2015

Joint Inference of Genome Structure and Content in Heterogeneous Tumour Samples.

Andrew W. McPherson, Andrew Roth, Gavin Ha, Sohrab P. Shah, Cédric Chauve, Süleyman Cenk Sahinalp

CoRR, 2015

2013

A robust hidden semi-Markov model with application to aCGH data processing.

Jiarui Ding, Sohrab P. Shah

Int. J. Data Min. Bioinform., 2013

2012

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing data.

Andrew Roth, Jiarui Ding, Ryan D. Morin, Anamaria Crisan, Gavin Ha, Ryan Giuliany, Ali Bashashati, Martin Hirst, Gulisa Turashvili, Arusha Oloumi, Marco A. Marra, Sam Aparicio, Sohrab P. Shah

Bioinform., 2012

Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data.

Jiarui Ding, Ali Bashashati, Andrew Roth, Arusha Oloumi, Kane Tse, Thomas Zeng, Gholamreza Haffari, Martin Hirst, Marco A. Marra, Anne Condon, Sam Aparicio, Sohrab P. Shah

Bioinform., 2012

Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing.

Andrew W. McPherson, Chunxiao Wu, Alexander Wyatt, Sohrab P. Shah, Colin C. Collins, Süleyman Cenk Sahinalp

Proceedings of the Research in Computational Molecular Biology, 2012

2011

deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data.

Andrew W. McPherson, Fereydoun Hormozdiari, Abdalnasser Zayed, Ryan Giuliany, Gavin Ha, Mark G. F. Sun, Malachi Griffith, Alireza Heravi Moussavi, Janine Senz, Nataliya Melnyk, Marina Pacheco, Marco A. Marra, Martin Hirst, Torsten O. Nielsen, Süleyman Cenk Sahinalp, David G. Huntsman, Sohrab P. Shah

PLoS Comput. Biol., 2011

Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.

Andrew W. McPherson, Chunxiao Wu, Iman Hajirasouliha, Fereydoun Hormozdiari, Faraz Hach, Anna Lapuk, Stanislav Volik, Sohrab P. Shah, Colin C. Collins, Süleyman Cenk Sahinalp

Bioinform., 2011

2010

Genomic analysis of a rare human tumor.

Steven J. M. Jones, Janessa Laskin, Yvonne Y. Li, Obi L. Griffith, Jianghong An, Mikhail Bilenky, Yaron S. N. Butterfield, Timothee Cezard, Eric Chuah, Richard Corbett, Anthony P. Fejes, Malachi Griffith, John Yee, Montgomery Martin, Michael Mayo, Nataliya Melnyk, Ryan D. Morin, Trevor J. Pugh, Tesa Severson, Sohrab P. Shah, Margaret Sutcliffe, Angela Tam, Jefferson Terry, Nina Thiessen, Thomas Thomson, Richard Varhol, Thomas Zeng, Yongjun Zhao, Richard A. Moore, David G. Huntsman, Inanç Birol, Martin Hirst, Robert A. Holt, Marco A. Marra

BMC Bioinform., 2010

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumors.

Rodrigo Goya, Mark G. F. Sun, Ryan D. Morin, Gillian Leung, Gavin Ha, Kimberley C. Wiegand, Janine Senz, Anamaria Crisan, Marco A. Marra, Martin Hirst, David G. Huntsman, Kevin P. Murphy, Sam Aparicio, Sohrab P. Shah

Bioinform., 2010

Robust hidden semi-Markov modeling of array CGH data.

Jiarui Ding, Sohrab P. Shah

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009

Model-based clustering of array CGH data.

Sohrab P. Shah, K-John Cheung Jr., Nathalie A. Johnson, Guillaume Alain, Randy D. Gascoyne, Douglas E. Horsman, Raymond T. Ng, Kevin P. Murphy

Bioinform., 2009

2007

Modeling recurrent DNA copy number alterations in array CGH data.

Sohrab P. Shah, Wan L. Lam, Raymond T. Ng, Kevin P. Murphy

Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007

2006

Integrating copy number polymorphisms into array CGH analysis using a robust HMM.

Sohrab P. Shah, Xiang Xuan, Ronald J. deLeeuw, Mehrnoush Khojasteh, Wan L. Lam, Raymond T. Ng, Kevin P. Murphy

Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

A Novel Algorithm For the Analysis Of Array Cgh Data.

Mehrnoush Khojasteh, Bradley P. Coe, Sohrab P. Shah, Rabab K. Ward, Wan L. Lam, Calum MacAulay

Proceedings of the 2006 IEEE International Conference on Acoustics Speech and Signal Processing, 2006

2005

Atlas - a data warehouse for integrative bioinformatics.

Sohrab P. Shah, Yong Huang, Tao Xu, Macaire Man Saint Yuen, John Ling, B. F. Francis Ouellette

BMC Bioinform., 2005

2004

Pegasys: software for executing and integrating analyses of biological sequences.

Sohrab P. Shah, David Y. M. He, Jessica N. Sawkins, Jeffrey C. Druce, Gerald T. Quon, Drew Lett, Grace X. Y. Zheng, Tao Xu, B. F. Francis Ouellette

BMC Bioinform., 2004

2003

GeneComber: Combining Outputs of Gene Prediction Programs for Improved Results.

Sohrab P. Shah, Graham P. McVicker, Alan K. Mackworth, Sanja Rogic, B. F. Francis Ouellette

Bioinform., 2003