Sofie Van Landeghem

According to our database, Sofie Van Landeghem authored at least 18 papers between 2009 and 2022.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2022

Multi hash embeddings in spaCy.

Lester James V. Miranda, Ákos Kádár, Adriane Boyd, Sofie Van Landeghem, Anders Søgaard, Matthew Honnibal

CoRR, 2022

2016

Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks.

Sofie Van Landeghem, Thomas Van Parys, Marieke Dubois, Dirk Inzé, Yves Van de Peer

BMC Bioinform., 2016

Cell line name recognition in support of the identification of synthetic lethality in cancer from text.

Suwisa Kaewphan, Sofie Van Landeghem, Tomoko Ohta, Yves Van de Peer, Filip Ginter, Sampo Pyysalo

Bioinform., 2016

2015

Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis.

Kai Hakala, Sofie Van Landeghem, Tapio Salakoski, Yves Van de Peer, Filip Ginter

BMC Bioinform., December, 2015

2013

Evaluating Large-scale Text Mining Applications Beyond the Traditional Numeric Performance Measures.

Sofie Van Landeghem, Suwisa Kaewphan, Filip Ginter, Yves Van de Peer

Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, 2013

EVEX in ST'13: Application of a large-scale text mining resource to event extraction and network construction.

Kai Hakala, Sofie Van Landeghem, Tapio Salakoski, Yves Van de Peer, Filip Ginter

Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

2012

Semantically linking molecular entities in literature through entity relationships.

Sofie Van Landeghem, Jari Björne, Thomas Abeel, Bernard De Baets, Tapio Salakoski, Yves Van de Peer

BMC Bioinform., 2012

Exploring Biomolecular Literature with EVEX: Connecting Genes through Events, Homology, and Indirect Associations.

Sofie Van Landeghem, Kai Hakala, Samuel Rönnqvist, Tapio Salakoski, Yves Van de Peer, Filip Ginter

Adv. Bioinformatics, 2012

PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations.

Jari Björne, Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta, Filip Ginter, Yves Van de Peer, Sophia Ananiadou, Tapio Salakoski

Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

2011

High-Precision Bio-molecular Event Extraction from Text Using Parallel Binary Classifiers.

Sofie Van Landeghem, Bernard De Baets, Yves Van de Peer, Yvan Saeys

Comput. Intell., 2011

U-Compare bio-event meta-service: compatible BioNLP event extraction services.

Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii

BMC Bioinform., 2011

EVEX: A PubMed-Scale Resource for Homology-Based Generalization of Text Mining Predictions.

Sofie Van Landeghem, Filip Ginter, Yves Van de Peer, Tapio Salakoski

Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, 2011

Detecting Entity Relations as a Supporting Task for Bio-Molecular Event Extraction.

Sofie Van Landeghem, Thomas Abeel, Bernard De Baets, Yves Van de Peer

Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

2010

Event based text mining for integrated network construction.

Yvan Saeys, Sofie Van Landeghem, Yves Van de Peer

Proceedings of the third International Workshop on Machine Learning in Systems Biology, 2010

Highlights of the BioTM 2010 workshop on advances in bio text mining.

Thomas Abeel, Sofie Van Landeghem, Roser Morante, Vincent Van Asch, Yves Van de Peer, Walter Daelemans, Yvan Saeys

BMC Bioinform., 2010

Discriminative and informative features for biomolecular text mining with ensemble feature selection.

Sofie Van Landeghem, Thomas Abeel, Yvan Saeys, Yves Van de Peer

Bioinform., 2010

Integration of Static Relations to Enhance Event Extraction from Text.

Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta, Yves Van de Peer

Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

2009

Analyzing text in search of bio-molecular events: a high-precision machine learning framework.

Sofie Van Landeghem, Yvan Saeys, Bernard De Baets, Yves Van de Peer

Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009