Socorro Gama-Castro

According to our database1, Socorro Gama-Castro authored at least 28 papers between 2000 and 2020.

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Bibliography

2020
Knowledge extraction for assisted curation of summaries of bacterial transcription factor properties.
Database J. Biol. Databases Curation, 2020

2019
RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12.
Nucleic Acids Res., 2019

Similarity corpus on microbial transcriptional regulation.
J. Biomed. Semant., 2019

MCO: towards an ontology and unified vocabulary for a framework-based annotation of microbial growth conditions.
Bioinform., 2019

2017
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12.
Nucleic Acids Res., 2017

Erratum: Strategies towards digital and semi-automated curation in RegulonDB.
Database J. Biol. Databases Curation, 2017

Strategies towards digital and semi-automated curation in RegulonDB.
Database J. Biol. Databases Curation, 2017

First steps in automatic summarization of transcription factor properties for RegulonDB: classification of sentences about structural domains and regulated processes.
Database J. Biol. Databases Curation, 2017

2016
COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses.
Nucleic Acids Res., 2016

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.
Nucleic Acids Res., 2016

Overview of the interactive task in BioCreative V.
Database J. Biol. Databases Curation, 2016

2015
An Approach towards Semi-automated Biomedical Literature Curation and Enrichment for a Major Biological Database.
Polibits, 2015

2014
COLOMBOS v2.0: an ever expanding collection of bacterial expression compendia.
Nucleic Acids Res., 2014

Assisted curation of regulatory interactions and growth conditions of OxyR in <i>E. coli</i> K-12.
Database J. Biol. Databases Curation, 2014

2013
RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.
Nucleic Acids Res., 2013

EcoCyc: fusing model organism databases with systems biology.
Nucleic Acids Res., 2013

2011
EcoCyc: a comprehensive database of <i>Escherichia coli</i> biology.
Nucleic Acids Res., 2011

RegulonDB version 7.0: transcriptional regulation of <i>Escherichia coli</i> K-12 integrated within genetic sensory response units (Gensor Units).
Nucleic Acids Res., 2011

2009
EcoCyc: A comprehensive view of <i>Escherichia coli</i> biology.
Nucleic Acids Res., 2009

2008
RegulonDB (version 6.0): gene regulation model of <i>Escherichia coli</i> K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.
Nucleic Acids Res., 2008

2006
RegulonDB (version 5.0): <i>Escherichia coli</i> K-12 transcriptional regulatory network, operon organization, and growth conditions.
Nucleic Acids Res., 2006

The comprehensive updated regulatory network of <i>Escherichia coli </i>K-12.
BMC Bioinform., 2006

2005
EcoCyc: a comprehensive database resource for <i>Escherichia coli</i>.
Nucleic Acids Res., 2005

2004
RegulonDB (version 4.0): transcriptional regulation, operon organization and growth conditions in Escherichia coli K-12.
Nucleic Acids Res., 2004

2002
The EcoCyc Database.
Nucleic Acids Res., 2002


2001
RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12.
Nucleic Acids Res., 2001

2000
RegulonDB (version 3.0): transcriptional regulation and operon organization in Escherichia coli K-12.
Nucleic Acids Res., 2000


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