Sing-Hoi Sze

According to our database, Sing-Hoi Sze authored at least 31 papers between 1997 and 2018.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2018

Codon-Based Sequence Alignment for Mutation Analysis by High-Throughput Sequencing.

Sing-Hoi Sze, Craig D. Kaplan

Proceedings of the 8th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2018

2017

Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in melilotus.

Shuhua Fu, Peter L. Chang, Maren L. Friesen, Natasha L. Teakle, Aaron M. Tarone, Sing-Hoi Sze

Proceedings of the 7th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2017

2016

A divide-and-conquer algorithm for large-scale de novo transcriptome assembly through combining small assemblies from existing algorithms.

Sing-Hoi Sze, Jonathan J. Parrott, Aaron M. Tarone

Proceedings of the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2016

2015

Parameterized and approximation algorithms for maximum agreement forest in multifurcating trees.

Jianer Chen, Jia-Hao Fan, Sing-Hoi Sze

Theor. Comput. Sci., 2015

2014

Finding Alignments of Conserved Graphlets in Protein Interaction Networks.

Mu-Fen Hsieh, Sing-Hoi Sze

J. Comput. Biol., 2014

Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data.

Shuhua Fu, Aaron M. Tarone, Sing-Hoi Sze

Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014

2013

Parameterized and Approximation Algorithms for the MAF Problem in Multifurcating Trees.

Jianer Chen, Jia-Hao Fan, Sing-Hoi Sze

Proceedings of the Graph-Theoretic Concepts in Computer Science, 2013

A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-seq data.

Sing-Hoi Sze, Aaron M. Tarone

Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

2012

Iterative Expansion and Color Coding: An Improved Algorithm for 3D-Matching.

Jianer Chen, Yang Liu, Songjian Lu, Sing-Hoi Sze, Fenghui Zhang

ACM Trans. Algorithms, 2012

Supervised Protein Family Classification and New Family Construction.

Gangman Yi, Michael R. Thon, Sing-Hoi Sze

J. Comput. Biol., 2012

Identifying Complexes from Protein Interaction Networks According to Different Types of Neighborhood Density.

Jia-Hao Fan, Jianer Chen, Sing-Hoi Sze

J. Comput. Biol., 2012

2011

Motif Finding in DNA Sequences Based on Skipping Nonconserved Positions in Background Markov Chains.

Xiaoyan Zhao, Sing-Hoi Sze

J. Comput. Biol., 2011

2010

Identifying Gene Clusters within Localized Regions in Multiple Genomes.

Qingwu Yang, Gangman Yi, Fenghui Zhang, Michael R. Thon, Sing-Hoi Sze

J. Comput. Biol., 2010

Graphlet alignment in protein interaction networks.

Mu-Fen Hsieh, Sing-Hoi Sze

Proceedings of the 2010 IEEE International Workshop on Genomic Signal Processing and Statistics, 2010

2009

Querying Pathways in Protein Interaction Networks Based on Hidden Markov Models.

Xiaoning Qian, Sing-Hoi Sze, Byung-Jun Yoon

J. Comput. Biol., 2009

2008

Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences.

Yue Lu, Sing-Hoi Sze

J. Comput. Biol., 2008

Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements.

Qingwu Yang, Sing-Hoi Sze

BMC Bioinform., 2008

2007

Path Matching and Graph Matching in Biological Networks.

Qingwu Yang, Sing-Hoi Sze

J. Comput. Biol., 2007

Identifying clusters of functionally related genes in genomes.

Gangman Yi, Sing-Hoi Sze, Michael R. Thon

Bioinform., 2007

Finding Pathway Structures in Protein Interaction Networks.

Songjian Lu, Fenghui Zhang, Jianer Chen, Sing-Hoi Sze

Algorithmica, 2007

Improved algorithms for path, matching, and packing problems.

Jianer Chen, Songjian Lu, Sing-Hoi Sze, Fenghui Zhang

Proceedings of the Eighteenth Annual ACM-SIAM Symposium on Discrete Algorithms, 2007

2006

A Polynomial Time Solvable Formulation of Multiple Sequence Alignment.

Sing-Hoi Sze, Yue Lu, Qingwu Yang

J. Comput. Biol., 2006

Greedy Localization and Color-Coding: Improved Matching and Packing Algorithms.

Yang Liu, Songjian Lu, Jianer Chen, Sing-Hoi Sze

Proceedings of the Parameterized and Exact Computation, Second International Workshop, 2006

2005

Improved Pattern-Driven Algorithms for Motif Finding in DNA Sequences.

Sing-Hoi Sze, Xiaoyan Zhao

Proceedings of the Systems Biology and Regulatory Genomics, 2005

2004

Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding.

Sing-Hoi Sze, Songjian Lu, Jianer Chen

Proceedings of the Algorithms in Bioinformatics, 4th International Workshop, 2004

2002

Finding Weak Motifs in DNA Sequences.

Sing-Hoi Sze, Mikhail S. Gelfand, Pavel A. Pevzner

Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

Splicing graphs and EST assembly problem.

Steffen Heber, Max A. Alekseyev, Sing-Hoi Sze, Haixu Tang, Pavel A. Pevzner

Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

2000

Combinatorial Approaches to Finding Subtle Signals in DNA Sequences.

Pavel A. Pevzner, Sing-Hoi Sze

Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, 2000

1998

Algorithms and software for support of gene identification experiments.

Sing-Hoi Sze, Mikhail A. Roytberg, Mikhail S. Gelfand, Andrey A. Mironov, Tatiana V. Astakhova, Pavel A. Pevzner

Bioinform., 1998

1997

Las Vegas Algorithms for Gene Recognition: Suboptimal and Error-Tolerant Spliced Alignment.

Sing-Hoi Sze, Pavel A. Pevzner

J. Comput. Biol., 1997

Gene Hunting without Sequencing Genomis Clones: the "Twenty Questions" game with genes.

Guorong Xu, Sing-Hoi Sze, Cheng-Pin Liu, Pavel A. Pevzner, Norman Arnheim

Proceedings of the German Conference on Bioinformatics, 1997