Simone Marini

Orcid: 0000-0003-0665-7815

According to our database1, Simone Marini authored at least 65 papers between 2000 and 2025.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2025
Underwater Mediterranean image analysis based on the compute continuum paradigm.
Future Gener. Comput. Syst., 2025

2024
Automated species classification and counting by deep-sea mobile crawler platforms using YOLO.
Ecol. Informatics, 2024

Forecasting dominance of SARS-CoV-2 lineages by anomaly detection using deep AutoEncoders.
Briefings Bioinform., 2024

Prediction of A. Baumannii Amikacin Resistance in Clinical Metagenomics.
Proceedings of the Digital Health and Informatics Innovations for Sustainable Health Care Systems, 2024

An Average-Case Efficient Two-Stage Algorithm for Enumerating All Longest Common Substrings of Minimum Length $k$ Between Genome Pairs.
Proceedings of the 12th IEEE International Conference on Healthcare Informatics, 2024

Learning on Forecasting HIV Epidemic Based on Individuals' Contact Networks.
Proceedings of the 17th International Joint Conference on Biomedical Engineering Systems and Technologies, 2024

2023
MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing.
Nucleic Acids Res., January, 2023

Correction: Lopez-Vazquez et al. Video Image Enhancement and Machine Learning Pipeline for Underwater Animal Detection and Classification at Cabled Observatories. Sensors 2020, 20, 726.
Sensors, 2023

Optimizing Dynamic Antibiotic Treatment Strategies against Invasive Methicillin-Resistant Staphylococcus Aureus Infections using Causal Survival Forests and G-Formula on Statewide Electronic Health Record Data.
Proceedings of the KDD'23 Workshop on Causal Discovery, 2023

2022
Joint Application of the Target Trial Causal Framework and Machine Learning Modeling to Optimize Antibiotic Therapy: Use Case on Acute Bacterial Skin and Skin Structure Infections due to Methicillin-resistant Staphylococcus aureus.
CoRR, 2022

Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics.
Bioinform., 2022

Towards routine employment of computational tools for antimicrobial resistance determination via high-throughput sequencing.
Briefings Bioinform., 2022

Assessing putative bias in prediction of anti-microbial resistance from real-world genotyping data under explicit causal assumptions.
Artif. Intell. Medicine, 2022

Dynamic Prediction of Non-Neutral SARS-Cov-2 Variants Using Incremental Machine Learning.
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022

Identification of Social and Racial Disparities in Risk of HIV Infection in Florida using Causal AI Methods.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Transmission cluster characteristics of global, regional, and lineage-specific SARS-CoV-2 phylogenies.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021
Research Trends and Future Perspectives in Marine Biomimicking Robotics.
Sensors, 2021

Fast and exact quantification of motif occurrences in biological sequences.
BMC Bioinform., 2021

KARGA: Multi-platform Toolkit for k-mer-based Antibiotic Resistance Gene Analysis of High-throughput Sequencing Data.
Proceedings of the IEEE EMBS International Conference on Biomedical and Health Informatics, 2021

2020
An Automated Pipeline for Image Processing and Data Treatment to Track Activity Rhythms of Paragorgia arborea in Relation to Hydrographic Conditions.
Sensors, 2020

Video Image Enhancement and Machine Learning Pipeline for Underwater Animal Detection and Classification at Cabled Observatories.
Sensors, 2020

Towards Naples Ecological REsearch for Augmented Observatories (NEREA): The NEREA-Fix Module, a Stand-Alone Platform for Long-Term Deep-Sea Ecosystem Monitoring.
Sensors, 2020

The Hierarchic Treatment of Marine Ecological Information from Spatial Networks of Benthic Platforms.
Sensors, 2020

A Flexible Autonomous Robotic Observatory Infrastructure for Bentho-Pelagic Monitoring.
Sensors, 2020

2019
Protease target prediction via matrix factorization.
Bioinform., 2019

Toward more accurate prediction of caspase cleavage sites: a comprehensive review of current methods, tools and features.
Briefings Bioinform., 2019

Underwater Fish Detection with Weak Multi-Domain Supervision.
Proceedings of the International Joint Conference on Neural Networks, 2019

A Semi-supervised Learning Approach for Pan-Cancer Somatic Genomic Variant Classification.
Proceedings of the Artificial Intelligence in Medicine, 2019

2018
Patient similarity for precision medicine: A systematic review.
J. Biomed. Informatics, 2018

2017
MTopGO: a tool for module identification in PPI Networks.
PeerJ Prepr., 2017

Dscam1 web server: online prediction of Dscam1 self- and hetero-affinity.
Bioinform., 2017

2016
Looking inside the Ocean: Toward an Autonomous Imaging System for Monitoring Gelatinous Zooplankton.
Sensors, 2016

Learning T2D Evolving Complexity from EMR and Administrative Data by Means of Continuous Time Bayesian Networks.
Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2016), 2016

2015
A Dynamic Bayesian Network model for long-term simulation of clinical complications in type 1 diabetes.
J. Biomed. Informatics, 2015

PaPI: pseudo amino acid composition to score human protein-coding variants.
BMC Bioinform., 2015

Preclinical Tests for Cerebral Stroke.
Proceedings of the 2015 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, 2015

A Genomic Data Fusion Framework to Exploit Rare and Common Variants for Association Discovery.
Proceedings of the Artificial Intelligence in Medicine, 2015

2014
Automated Video Imaging System for Counting Deep-Sea Bioluminescence Organisms Events.
Proceedings of the 2014 ICPR Workshop on Computer Vision for Analysis of Underwater Imagery, 2014

Automated Gelatinous Zooplankton Acquisition and Recognition.
Proceedings of the 2014 ICPR Workshop on Computer Vision for Analysis of Underwater Imagery, 2014

2012
Understanding Zooplankton Long Term Variability through Genetic Programming.
Proceedings of the Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, 2012

2011
Spectral feature selection for shape characterization and classification.
Vis. Comput., 2011

Part-in-whole 3D shape matching and docking.
Vis. Comput., 2011

The CHRONIOUS Ontology-Driven Search Tool: Enabling Access to Focused and Up-to-Date Healthcare Literature
CoRR, 2011

An Ontology-Driven Search Module for Accessing Chronic Pathology Literature.
Proceedings of the On the Move to Meaningful Internet Systems: OTM 2011 Workshops, 2011

2010
Thesaurus-based 3D Object Retrieval with Part-in-Whole Matching.
Int. J. Comput. Vis., 2010

Feature Selection for Enhanced Spectral Shape Comparison .
Proceedings of the 3rd Eurographics Workshop on 3D Object Retrieval, 2010

The Fast Reject Schema for Part-in-Whole 3D Shape Matching.
Proceedings of the 3rd Eurographics Workshop on 3D Object Retrieval, 2010

2009
A Critical Assessment of 2D and 3D Face Recognition Algorithms.
Proceedings of the Sixth IEEE International Conference on Advanced Video and Signal Based Surveillance, 2009

SHREC'09 Track: Structural Shape Retrieval on Watertight Models.
Proceedings of the 2nd Eurographics Workshop on 3D Object Retrieval, 2009

2008
SHape REtrieval contest 2008: Classification of watertight models.
Proceedings of the 2008 International Conference on Shape Modeling and Applications (SMI 2008), 2008

2007
Structural Shape Prototypes for the Automatic Classification of 3D Objects.
IEEE Computer Graphics and Applications, 2007

3D Classification Via Structural Prototypes.
Proceedings of the Semantic Multimedia, 2007

3D Shape Description and Matching Based on Properties of Real Functions.
Proceedings of the 28th Annual Conference of the European Association for Computer Graphics, 2007

2006
Sub-part correspondence by structural descriptors of 3D shapes.
Comput. Aided Des., 2006

A Comparison Framework for 3D Object Classification Methods.
Proceedings of the Multimedia Content Representation, 2006

Sub-part correspondence using structure and geometry.
Proceedings of the Fourth Eurographics Italian Chapter Conference 2006, 2006

Structural Descriptors for 3D Shapes.
Proceedings of the Content-Based Retrieval, 23.04. - 28.04.2006, 2006

Partial Matching by Structural Descriptors.
Proceedings of the Content-Based Retrieval, 23.04. - 28.04.2006, 2006

2005
3D shape similarity through structural descriptors.
PhD thesis, 2005

3D object comparison based on shape descriptors.
Int. J. Comput. Appl. Technol., 2005

From Exact to Approximate Maximum Common Subgraph.
Proceedings of the Graph-Based Representations in Pattern Recognition, 2005

2003
An overview on properties and efficacy of topological skeletons in Shape Modelling.
Proceedings of the 2003 International Conference on Shape Modeling and Applications (SMI 2003), 2003

3D Shape Matching through Topological Structures.
Proceedings of the Discrete Geometry for Computer Imagery, 11th International Conference, 2003

2000
HEMASL: A Flexible Language to Specify Heterogeneous Agents.
Proceedings of the WOA 2000: Dagli Oggetti agli Agenti. 1st AI*IA/TABOO Joint Workshop "From Objects to Agents": Evolutive Trends of Software Systems, 2000

Specification of Heterogeneous Agent Architectures.
Proceedings of the Intelligent Agents VII. Agent Theories Architectures and Languages, 2000


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