Simone Leo

According to our database, Simone Leo authored at least 18 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

WorkflowHub: a registry for computational workflows.

Johan Gustafsson, Sean R. Wilkinson, Finn Bacall, Luca Pireddu, Stian Soiland-Reyes, Simone Leo, Stuart Owen, Nick S. Juty, José María Fernández, Björn A. Grüning, Tom Brown, Hervé Ménager, Salvador Capella-Gutiérrez, Frederik Coppens, Carole A. Goble

CoRR, 2024

2023

Recording provenance of workflow runs with RO-Crate.

Simone Leo, Michael R. Crusoe, Laura Rodríguez-Navas, Raül Sirvent, Alexander Kanitz, Paul De Geest, Rudolf Wittner, Luca Pireddu, Daniel Garijo, José M. Fernández, Iacopo Colonnelli, Matej Gallo, Tazro Ohta, Hirotaka Suetake, Salvador Capella-Gutiérrez, Renske de Wit, Bruno de Paula Kinoshita, Stian Soiland-Reyes

CoRR, 2023

The EOSC-Life Workflow Collaboratory for the Life Sciences.

Carole A. Goble, Finn Bacall, Stian Soiland-Reyes, Stuart Owen, Ignacio Eguinoa, Bert Droesbeke, Hervé Ménager, Laura Rodríguez-Navas, José María Fernández, Björn A. Grüning, Simone Leo, Luca Pireddu, Michael R. Crusoe, Johan Gustafsson, Salvador Capella-Gutiérrez, Frederik Coppens

Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

2022

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update.

Enis Afgan, Anton Nekrutenko, Björn A. Grüning, Daniel J. Blankenberg, Jeremy Goecks, Michael C. Schatz, Alexander E. Ostrovsky, Alexandru Mahmoud, Andrew J. Lonie, Anna Syme, Anne Fouilloux, Anthony Bretaudeau, Anup Kumar, Arthur C. Eschenlauer, Assunta D. Desanto, Aysam Guerler, Beatriz Serrano-Solano, Bérénice Batut, Bradley W. Langhorst, Bridget Carr, Bryan A. Raubenolt, Cameron J. Hyde, Catherine J. Bromhead, Christopher B. Barnett, Coline Royaux, Cristóbal Gallardo, Daniel J. Fornika, Dannon Baker, Dave Bouvier, Dave Clements, David A. de Lima Morais, David Lopez Tabernero, Delphine Larivière, Engy Nasr, Federico Zambelli, Florian Heyl, Fotis E. Psomopoulos, Frederik Coppens, Gareth R. Price, Gianmauro Cuccuru, Gildas Le Corguillé, Gregory Von Kuster, Gulsum Gudukbay, Helena Rasche, Hans-Rudolf Hotz, Ignacio Eguinoa, Igor V. Makunin, Isuru Ranawaka, James Taylor, Jayadev Joshi, Jennifer Hillman-Jackson, John Chilton, Kaivan Kamali, Keith Suderman, Krzysztof Poterlowicz, Yvan Le Bras, Lucille Lopez-Delisle, Luke Sargent, Madeline E. Bassetti, Marco Antonio Tangaro, Marius van den Beek, Martin Cech, Matthias Bernt, Matthias Fahrner, Mehmet Tekman, Melanie Christine Föll, Michael R. Crusoe, Miguel Roncoroni, Natalie Kucher, Nate Coraor, Nicholas Stoler, Nick Rhodes, Nicola Soranzo, Niko Pinter, Nuwan Goonasekera, Pablo A. Moreno, Pavankumar Videm, Petera Melanie, Pietro Mandreoli, Pratik D. Jagtap, Qiang Gu, Ralf J. M. Weber, Ross Lazarus, Ruben H. P. Vorderman, Saskia D. Hiltemann, Sergey Golitsynskiy, Shilpa Garg, Simon A. Bray, Simon L. Gladman, Simone Leo, Subina P. Mehta, Timothy J. Griffin, Vahid Jalili, Yves Vandenbrouck, Victor Wen, Vijay K. Nagampalli, Wendi A. Bacon, Willem L. De Koning, Wolfgang Maier, Peter J. Briggs

Nucleic Acids Res., 2022

Packaging research artefacts with RO-Crate.

Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, José María Fernández, Daniel Garijo, Björn A. Grüning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole A. Goble

Data Sci., 2022

AI Support for Accelerating Histopathological Slide Examinations of Prostate Cancer in Clinical Studies.

Mauro Del Rio, Luca Lianas, Oskar Aspegren, Giovanni Busonera, Francesco Versaci, Renata Zelic, Per H. Vincent, Simone Leo, Andreas Pettersson, Olof Akre, Luca Pireddu

Proceedings of the Image Analysis and Processing. ICIAP 2022 Workshops, 2022

The DeepHealth Toolkit: A Key European Free and Open-Source Software for Deep Learning and Computer Vision Ready to Exploit Heterogeneous HPC and Cloud Architectures.

Marco Aldinucci, David Atienza, Federico Bolelli, Mónica Caballero, Iacopo Colonnelli, José Flich, Jon Ander Gómez, David González, Costantino Grana, Marco Grangetto, Simone Leo, Pedro López, Dana Oniga, Roberto Paredes, Luca Pireddu, Eduardo Quiñones, Tatiana Silva, Enzo Tartaglione, Marina Zapater

Proceedings of the Technologies and Applications for Big Data Value, 2022

2020

The DeepHealth Toolkit: A Unified Framework to Boost Biomedical Applications.

Michele Cancilla, Laura Canalini, Federico Bolelli, Stefano Allegretti, Salvador Carrión, Roberto Paredes, Jon Ander Gómez, Simone Leo, Marco Enrico Piras, Luca Pireddu, Asaf Badouh, Santiago Marco-Sola, Lluc Alvarez, Miquel Moretó, Costantino Grana

Proceedings of the 25th International Conference on Pattern Recognition, 2020

2018

OpenEHR modeling for genomics in clinical practice.

Cecilia Mascia, Paolo Uva, Simone Leo, Gianluigi Zanetti

Int. J. Medical Informatics, 2018

2014

BioBlend.objects: metacomputing with Galaxy.

Simone Leo, Luca Pireddu, Gianmauro Cuccuru, Luca Lianas, Nicola Soranzo, Enis Afgan, Gianluigi Zanetti

Bioinform., 2014

An automated infrastructure to support high-throughput bioinformatics.

Gianmauro Cuccuru, Simone Leo, Luca Lianas, Michele Muggiri, Andrea Pinna, Luca Pireddu, Paolo Uva, Andrea Angius, Giorgio Fotia, Gianluigi Zanetti

Proceedings of the International Conference on High Performance Computing & Simulation, 2014

A Hadoop-Galaxy adapter for user-friendly and scalable data-intensive bioinformatics in Galaxy.

Luca Pireddu, Simone Leo, Nicola Soranzo, Gianluigi Zanetti

Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2011

SEAL: a distributed short read mapping and duplicate removal tool.

Luca Pireddu, Simone Leo, Gianluigi Zanetti

Bioinform., 2011

2010

Suspending, migrating and resuming HPC virtual clusters.

Paolo Anedda, Simone Leo, Simone Manca, Massimo Gaggero, Gianluigi Zanetti

Future Gener. Comput. Syst., 2010

Using Virtual Clusters to Decouple Computation and Data Management in High Throughput Analysis Applications.

Simone Leo, Paolo Anedda, Massimo Gaggero, Gianluigi Zanetti

Proceedings of the 18th Euromicro Conference on Parallel, 2010

Pydoop: a Python MapReduce and HDFS API for Hadoop.

Simone Leo, Gianluigi Zanetti

Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010

2009

Biodoop: Bioinformatics on Hadoop.

Simone Leo, Federico Andrea Santoni, Gianluigi Zanetti

Proceedings of the ICPPW 2009, 2009

Scalable Repositories for Virtual Clusters.

Paolo Anedda, Simone Leo, Massimo Gaggero, Gianluigi Zanetti

Proceedings of the Euro-Par 2009, 2009