Simon Rogers

Orcid: 0000-0003-3578-4477

According to our database1, Simon Rogers authored at least 60 papers between 2003 and 2022.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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Links

On csauthors.net:

Bibliography

2022
Using topic modeling to detect cellular crosstalk in scRNA-seq.
PLoS Comput. Biol., 2022

ViMMS 2.0: A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics.
J. Open Source Softw., 2022

Safe machine learning model release from Trusted Research Environments: The AI-SDC package.
CoRR, 2022

GRAIMATTER Green Paper: Recommendations for disclosure control of trained Machine Learning (ML) models from Trusted Research Environments (TREs).
CoRR, 2022

2021
Up-down biphasic volume response of human red blood cells to PIEZO1 activation during capillary transits.
PLoS Comput. Biol., 2021

PIEZO1 and the mechanism of the long circulatory longevity of human red blood cells.
PLoS Comput. Biol., 2021

Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships.
PLoS Comput. Biol., 2021

Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions.
PLoS Comput. Biol., 2021

R package for statistical inference in dynamical systems using kernel based gradient matching: KGode.
Comput. Stat., 2021

Machine Learning Models Disclosure from Trusted Research Environments (TRE), Challenges and Opportunities.
CoRR, 2021

Forward and Inverse models in HCI: Physical simulation and deep learning for inferring 3D finger pose.
CoRR, 2021

Probabilistic framework for integration of mass spectrum and retention time information in small molecule identification.
Bioinform., 2021

2020
Per-Host DDoS Mitigation by Direct-Control Reinforcement Learning.
IEEE Trans. Netw. Serv. Manag., 2020

Predicting host taxonomic information from viral genomes: A comparison of feature representations.
PLoS Comput. Biol., 2020

matchms - processing and similarity evaluation of mass spectrometry data.
J. Open Source Softw., 2020

2018
Statistical inference in mechanistic models: time warping for improved gradient matching.
Comput. Stat., 2018

Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry.
Bioinform., 2018

ShinyKGode: an interactive application for ODE parameter inference using gradient matching.
Bioinform., 2018

Autonomous Clothes Manipulation Using a Hierarchical Vision Architecture.
IEEE Access, 2018

2017
PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data.
Bioinform., 2017

Single-shot clothing category recognition in free-configurations with application to autonomous clothes sorting.
Proceedings of the 2017 IEEE/RSJ International Conference on Intelligent Robots and Systems, 2017

Pre-interaction identification by dynamic grip classification.
Proceedings of the 11th International Conference on Ubiquitous Information Management and Communication, 2017

2016
Robot Vision Architecture for Autonomous Clothes Manipulation.
CoRR, 2016

Recognising the clothing categories from free-configuration using Gaussian-Process-based interactive perception.
Proceedings of the 2016 IEEE International Conference on Robotics and Automation, 2016

Fast Parameter Inference in Nonlinear Dynamical Systems using Iterative Gradient Matching.
Proceedings of the 33nd International Conference on Machine Learning, 2016

Parameter Inference in Differential Equation Models of Biopathways Using Time Warped Gradient Matching.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2016

Detecting Swipe Errors on Touchscreens using Grip Modulation.
Proceedings of the 2016 CHI Conference on Human Factors in Computing Systems, 2016

2015
Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets.
Bioinform., 2015

Accurate garment surface analysis using an active stereo robot head with application to dual-arm flattening.
Proceedings of the IEEE International Conference on Robotics and Automation, 2015

2014
Stronger findings from mass spectral data through multi-peak modeling.
BMC Bioinform., 2014

Stronger findings for metabolomics through Bayesian modeling of multiple peaks and compound correlations.
Bioinform., 2014

MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach.
Bioinform., 2014

Detecting Missing Content Queries in an SMS-Based HIV/AIDS FAQ Retrieval System.
Proceedings of the Advances in Information Retrieval, 2014

Uncertain text entry on mobile devices.
Proceedings of the CHI Conference on Human Factors in Computing Systems, 2014

28 frames later: predicting screen touches from back-of-device grip changes.
Proceedings of the CHI Conference on Human Factors in Computing Systems, 2014

2013
Investigating the Disagreement Between Clinicians' Ratings of Patients in ICUs.
IEEE J. Biomed. Health Informatics, 2013

A Heuristic-Based Approach for Flattening Wrinkled Clothes.
Proceedings of the Towards Autonomous Robotic Systems - 14th Annual Conference, 2013

Evaluating bad query abandonment in an iterative SMS-based FAQ retrieval system.
Proceedings of the Open research Areas in Information Retrieval, 2013

Exploiting Query Logs and Field-Based Models to Address Term Mismatch in an HIV/AIDS FAQ Retrieval System.
Proceedings of the Natural Language Processing and Information Systems, 2013

Sparse selection of training data for touch correction systems.
Proceedings of the 15th International Conference on Human-Computer Interaction with Mobile Devices and Services, 2013

User-specific touch models in a cross-device context.
Proceedings of the 15th International Conference on Human-Computer Interaction with Mobile Devices and Services, 2013

ODE parameter inference using adaptive gradient matching with Gaussian processes.
Proceedings of the Sixteenth International Conference on Artificial Intelligence and Statistics, 2013

2012
A user-specific machine learning approach for improving touch accuracy on mobile devices.
Proceedings of the 25th Annual ACM Symposium on User Interface Software and Technology, 2012

2011
Protein interaction detection in sentences via Gaussian Processes: a preliminary evaluation.
Int. J. Data Min. Bioinform., 2011

AnglePose: robust, precise capacitive touch tracking via 3d orientation estimation.
Proceedings of the International Conference on Human Factors in Computing Systems, 2011

A First Course in Machine Learning.
Chapman and Hall / CRC machine learning and pattern recognition series, CRC Press, ISBN: 978-1-43-982414-6, 2011

2010
Semi-parametric analysis of multi-rater data.
Stat. Comput., 2010

Infinite factorization of multiple non-parametric views.
Mach. Learn., 2010

FingerCloud: uncertainty and autonomy handover incapacitive sensing.
Proceedings of the 28th International Conference on Human Factors in Computing Systems, 2010

2009
Probabilistic assignment of formulas to mass peaks in metabolomics experiments.
Bioinform., 2009

Classification of Protein Interaction Sentences via Gaussian Processes.
Proceedings of the Pattern Recognition in Bioinformatics, 2009

2008
Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models.
Bioinform., 2008

2007
Multi-class Semi-supervised Learning with the e-truncated Multinomial Probit Gaussian Process.
Proceedings of the Gaussian Processes in Practice, 2007

Bayesian model-based inference of transcription factor activity.
BMC Bioinform., 2007

2006
Variational Bayesian Multinomial Probit Regression with Gaussian Process Priors.
Neural Comput., 2006

2005
The Latent Process Decomposition of cDNA Microarray Data Sets.
IEEE ACM Trans. Comput. Biol. Bioinform., 2005

A Bayesian regression approach to the inference of regulatory networks from gene expression data.
Bioinform., 2005

Hierarchic Bayesian models for kernel learning.
Proceedings of the Machine Learning, 2005

Disease Classification from Capillary Electrophoresis: Mass Spectrometry.
Proceedings of the Pattern Recognition and Data Mining, 2005

2003
Estimating Dataset Size Requirements for Classifying DNA Microarray Data.
J. Comput. Biol., 2003


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