Simon Rogers

According to our database, Simon Rogers authored at least 62 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Development and assessment of a machine learning tool for predicting emergency admission in Scotland.

James Liley, Gergo Bohner, Samuel R. Emerson, Bilal A. Mateen, Katie Borland, David Carr, Scott Heald, Samuel D. Oduro, Jill Ireland, Keith Moffat, Rachel Porteous, Stephen Riddell, Simon Rogers, Ioanna Thoma, Nathan Cunningham, Chris Holmes, Katrina Payne, Sebastian J. Vollmer, Catalina A. Vallejos, Louis J. M. Aslett

npj Digit. Medicine, 2024

Publisher Correction: Development and assessment of a machine learning tool for predicting emergency admission in Scotland.

James Liley, Gergo Bohner, Samuel R. Emerson, Bilal A. Mateen, Katie Borland, David Carr, Scott Heald, Samuel D. Oduro, Jill Ireland, Keith Moffat, Rachel Porteous, Stephen Riddell, Simon Rogers, Ioanna Thoma, Nathan Cunningham, Chris Holmes, Katrina Payne, Sebastian J. Vollmer, Catalina A. Vallejos, Louis J. M. Aslett

npj Digit. Medicine, 2024

2022

Using topic modeling to detect cellular crosstalk in scRNA-seq.

Alexandrina Pancheva, Helen Wheadon, Simon Rogers, Thomas D. Otto

PLoS Comput. Biol., 2022

ViMMS 2.0: A framework to develop, test and optimise fragmentation strategies in LC-MS metabolomics.

Joe Wandy, Vinny Davies, Ross McBride, Stefan Weidt, Simon Rogers, Rónán Daly

J. Open Source Softw., 2022

Safe machine learning model release from Trusted Research Environments: The AI-SDC package.

Jim Smith, Richard John Preen, Andrew McCarthy, Alba Crespi-Boixader, James Liley, Simon Rogers

CoRR, 2022

GRAIMATTER Green Paper: Recommendations for disclosure control of trained Machine Learning (ML) models from Trusted Research Environments (TREs).

Emily R. Jefferson, James Liley, Maeve Malone, Smarti Reel, Alba Crespi-Boixader, Xaroula Kerasidou, Francesco Tava, Andrew McCarthy, Richard Preen, Alberto Blanco-Justicia, Esma Mansouri-Benssassi, Josep Domingo-Ferrer, Jillian Beggs, Antony Chuter, Christian Cole, Felix Ritchie, Angela Daly, Simon Rogers, Jim Smith

CoRR, 2022

2021

Up-down biphasic volume response of human red blood cells to PIEZO1 activation during capillary transits.

Simon Rogers, Virgilio L. Lew

PLoS Comput. Biol., 2021

PIEZO1 and the mechanism of the long circulatory longevity of human red blood cells.

Simon Rogers, Virgilio L. Lew

PLoS Comput. Biol., 2021

Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships.

Florian Huber, Lars Ridder, Stefan Verhoeven, Jurriaan H. Spaaks, Faruk Diblen, Simon Rogers, Justin J. J. van der Hooft

PLoS Comput. Biol., 2021

Ranking microbial metabolomic and genomic links in the NPLinker framework using complementary scoring functions.

Grímur Hjörleifsson Eldjárn, Andrew Ramsay, Justin J. J. van der Hooft, Katherine R. Duncan, Sylvia Soldatou, Juho Rousu, Rónán Daly, Joe Wandy, Simon Rogers

PLoS Comput. Biol., 2021

R package for statistical inference in dynamical systems using kernel based gradient matching: KGode.

Mu Niu, Joe Wandy, Rónán Daly, Simon Rogers, Dirk Husmeier

Comput. Stat., 2021

Machine Learning Models Disclosure from Trusted Research Environments (TRE), Challenges and Opportunities.

Esma Mansouri-Benssassi, Simon Rogers, Jim Smith, Felix Ritchie, Emily R. Jefferson

CoRR, 2021

Forward and Inverse models in HCI: Physical simulation and deep learning for inferring 3D finger pose.

Roderick Murray-Smith, John H. Williamson, Andrew Ramsay, Francesco Tonolini, Simon Rogers, Antoine Loriette

CoRR, 2021

Probabilistic framework for integration of mass spectrum and retention time information in small molecule identification.

Eric Bach, Simon Rogers, John Williamson, Juho Rousu

Bioinform., 2021

2020

Per-Host DDoS Mitigation by Direct-Control Reinforcement Learning.

Kyle A. Simpson, Simon Rogers, Dimitrios P. Pezaros

IEEE Trans. Netw. Serv. Manag., 2020

Predicting host taxonomic information from viral genomes: A comparison of feature representations.

Francesca Young, Simon Rogers, David L. Robertson

PLoS Comput. Biol., 2020

matchms - processing and similarity evaluation of mass spectrometry data.

Florian Huber, Stefan Verhoeven, Christiaan Meijer, Hanno Spreeuw, Efraín Castilla, Cunliang Geng, Justin J. J. van der Hooft, Simon Rogers, Adam Belloum, Faruk Diblen, Jurriaan H. Spaaks

J. Open Source Softw., 2020

2018

Statistical inference in mechanistic models: time warping for improved gradient matching.

Mu Niu, Benn Macdonald, Simon Rogers, Maurizio Filippone, Dirk Husmeier

Comput. Stat., 2018

Ms2lda.org: web-based topic modelling for substructure discovery in mass spectrometry.

Joe Wandy, Yunfeng Zhu, Justin J. J. van der Hooft, Rónán Daly, Michael P. Barrett, Simon Rogers

Bioinform., 2018

ShinyKGode: an interactive application for ODE parameter inference using gradient matching.

Joe Wandy, Mu Niu, Diana Giurghita, Rónán Daly, Simon Rogers, Dirk Husmeier

Bioinform., 2018

Autonomous Clothes Manipulation Using a Hierarchical Vision Architecture.

Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, Jan Paul Siebert

IEEE Access, 2018

2017

PiMP my metabolome: an integrated, web-based tool for LC-MS metabolomics data.

Yoann Gloaguen, Fraser R. Morton, Rónán Daly, Ross Gurden, Simon Rogers, Joe Wandy, David Wilson, Michael P. Barrett, Karl E. V. Burgess

Bioinform., 2017

Single-shot clothing category recognition in free-configurations with application to autonomous clothes sorting.

Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, Rustam Stolkin, J. Paul Siebert

Proceedings of the 2017 IEEE/RSJ International Conference on Intelligent Robots and Systems, 2017

Pre-interaction identification by dynamic grip classification.

Mohammad Faizuddin Mohd Noor, Simon Rogers, John Williamson

Proceedings of the 11th International Conference on Ubiquitous Information Management and Communication, 2017

2016

Robot Vision Architecture for Autonomous Clothes Manipulation.

Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, J. Paul Siebert

CoRR, 2016

Recognising the clothing categories from free-configuration using Gaussian-Process-based interactive perception.

Li Sun, Simon Rogers, Gerardo Aragon-Camarasa, J. Paul Siebert

Proceedings of the 2016 IEEE International Conference on Robotics and Automation, 2016

Fast Parameter Inference in Nonlinear Dynamical Systems using Iterative Gradient Matching.

Mu Niu, Simon Rogers, Maurizio Filippone, Dirk Husmeier

Proceedings of the 33nd International Conference on Machine Learning, 2016

Parameter Inference in Differential Equation Models of Biopathways Using Time Warped Gradient Matching.

Mu Niu, Simon Rogers, Maurizio Filippone, Dirk Husmeier

Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2016

Detecting Swipe Errors on Touchscreens using Grip Modulation.

Mohammad Faizuddin Mohd Noor, Simon Rogers, John Williamson

Proceedings of the 2016 CHI Conference on Human Factors in Computing Systems, 2016

2015

Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets.

Joe Wandy, Rónán Daly, Rainer Breitling, Simon Rogers

Bioinform., 2015

Accurate garment surface analysis using an active stereo robot head with application to dual-arm flattening.

Li Sun, Gerardo Aragon-Camarasa, Simon Rogers, J. Paul Siebert

Proceedings of the IEEE International Conference on Robotics and Automation, 2015

2014

Stronger findings from mass spectral data through multi-peak modeling.

Tommi Suvitaival, Simon Rogers, Samuel Kaski

BMC Bioinform., 2014

Stronger findings for metabolomics through Bayesian modeling of multiple peaks and compound correlations.

Tommi Suvitaival, Simon Rogers, Samuel Kaski

Bioinform., 2014

MetAssign: probabilistic annotation of metabolites from LC-MS data using a Bayesian clustering approach.

Rónán Daly, Simon Rogers, Joe Wandy, Andris Jankevics, Karl E. V. Burgess, Rainer Breitling

Bioinform., 2014

Detecting Missing Content Queries in an SMS-Based HIV/AIDS FAQ Retrieval System.

Edwin Thuma, Simon Rogers, Iadh Ounis

Proceedings of the Advances in Information Retrieval, 2014

Uncertain text entry on mobile devices.

Daryl Weir, Henning Pohl, Simon Rogers, Keith Vertanen, Per Ola Kristensson

Proceedings of the CHI Conference on Human Factors in Computing Systems, 2014

28 frames later: predicting screen touches from back-of-device grip changes.

Mohammad Faizuddin Mohd Noor, Andrew Ramsay, Stephen Hughes, Simon Rogers, John Williamson, Roderick Murray-Smith

Proceedings of the CHI Conference on Human Factors in Computing Systems, 2014

2013

Investigating the Disagreement Between Clinicians' Ratings of Patients in ICUs.

Simon Rogers, Derek H. Sleeman, John Kinsella

IEEE J. Biomed. Health Informatics, 2013

A Heuristic-Based Approach for Flattening Wrinkled Clothes.

Li Sun, Gerardo Aragon-Camarasa, W. Paul Cockshott, Simon Rogers, J. Paul Siebert

Proceedings of the Towards Autonomous Robotic Systems - 14th Annual Conference, 2013

Evaluating bad query abandonment in an iterative SMS-based FAQ retrieval system.

Edwin Thuma, Simon Rogers, Iadh Ounis

Proceedings of the Open research Areas in Information Retrieval, 2013

Exploiting Query Logs and Field-Based Models to Address Term Mismatch in an HIV/AIDS FAQ Retrieval System.

Edwin Thuma, Simon Rogers, Iadh Ounis

Proceedings of the Natural Language Processing and Information Systems, 2013

Sparse selection of training data for touch correction systems.

Daryl Weir, Daniel Buschek, Simon Rogers

Proceedings of the 15th International Conference on Human-Computer Interaction with Mobile Devices and Services, 2013

User-specific touch models in a cross-device context.

Daniel Buschek, Simon Rogers, Roderick Murray-Smith

Proceedings of the 15th International Conference on Human-Computer Interaction with Mobile Devices and Services, 2013

ODE parameter inference using adaptive gradient matching with Gaussian processes.

Frank Dondelinger, Dirk Husmeier, Simon Rogers, Maurizio Filippone

Proceedings of the Sixteenth International Conference on Artificial Intelligence and Statistics, 2013

2012

A user-specific machine learning approach for improving touch accuracy on mobile devices.

Daryl Weir, Simon Rogers, Roderick Murray-Smith, Markus Löchtefeld

Proceedings of the 25th Annual ACM Symposium on User Interface Software and Technology, 2012

2011

Protein interaction detection in sentences via Gaussian Processes: a preliminary evaluation.

Tamara Polajnar, Simon Rogers, Mark A. Girolami

Int. J. Data Min. Bioinform., 2011

AnglePose: robust, precise capacitive touch tracking via 3d orientation estimation.

Simon Rogers, John Williamson, Craig D. Stewart, Roderick Murray-Smith

Proceedings of the International Conference on Human Factors in Computing Systems, 2011

A First Course in Machine Learning.

Simon Rogers, Mark A. Girolami

Chapman and Hall / CRC machine learning and pattern recognition series, CRC Press, ISBN: 978-1-43-982414-6, 2011

2010

Semi-parametric analysis of multi-rater data.

Simon Rogers, Mark A. Girolami, Tamara Polajnar

Stat. Comput., 2010

Infinite factorization of multiple non-parametric views.

Simon Rogers, Arto Klami, Janne Sinkkonen, Mark A. Girolami, Samuel Kaski

Mach. Learn., 2010

FingerCloud: uncertainty and autonomy handover incapacitive sensing.

Simon Rogers, John Williamson, Craig D. Stewart, Roderick Murray-Smith

Proceedings of the 28th International Conference on Human Factors in Computing Systems, 2010

2009

Probabilistic assignment of formulas to mass peaks in metabolomics experiments.

Simon Rogers, Richard A. Scheltema, Mark A. Girolami, Rainer Breitling

Bioinform., 2009

Classification of Protein Interaction Sentences via Gaussian Processes.

Tamara Polajnar, Simon Rogers, Mark A. Girolami

Proceedings of the Pattern Recognition in Bioinformatics, 2009

2008

Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models.

Simon Rogers, Mark A. Girolami, Walter Kolch, Katrina M. Waters, Tao Liu, Brian Thrall, H. Steven Wiley

Bioinform., 2008

2007

Multi-class Semi-supervised Learning with the e-truncated Multinomial Probit Gaussian Process.

Simon Rogers, Mark A. Girolami

Proceedings of the Gaussian Processes in Practice, 2007

Bayesian model-based inference of transcription factor activity.

Simon Rogers, Raya Khanin, Mark A. Girolami

BMC Bioinform., 2007

2006

Variational Bayesian Multinomial Probit Regression with Gaussian Process Priors.

Mark A. Girolami, Simon Rogers

Neural Comput., 2006

2005

The Latent Process Decomposition of cDNA Microarray Data Sets.

Simon Rogers, Mark A. Girolami, Colin Campbell, Rainer Breitling

IEEE ACM Trans. Comput. Biol. Bioinform., 2005

A Bayesian regression approach to the inference of regulatory networks from gene expression data.

Simon Rogers, Mark A. Girolami

Bioinform., 2005

Hierarchic Bayesian models for kernel learning.

Mark A. Girolami, Simon Rogers

Proceedings of the Machine Learning, 2005

Disease Classification from Capillary Electrophoresis: Mass Spectrometry.

Simon Rogers, Mark A. Girolami, Ronald Krebs, Harald Mischak

Proceedings of the Pattern Recognition and Data Mining, 2005

2003

Estimating Dataset Size Requirements for Classifying DNA Microarray Data.

Sayan Mukherjee, Pablo Tamayo, Simon Rogers, Ryan M. Rifkin, Anna Engle, Colin Campbell, Todd R. Golub, Jill P. Mesirov

J. Comput. Biol., 2003